PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

NCBI: 15-OCT-2021

⊟Summary

• organism: Streptococcus pneumoniae 670-6B
• locus tag: SP670_RS08955 [old locus tag: SP670_1804 ]
• pan locus tag^?: PNEUPAN003115000
• symbol: dnaI
• pan gene symbol^?: dnaI
• synonym:
• product: primosomal protein DnaI

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SP670_RS08955 [old locus tag: SP670_1804 ]
• symbol: dnaI
• product: primosomal protein DnaI
• replicon: chromosome
• strand: -
• coordinates: 1683726..1684622
• length: 897
• essential: unknown other strains

⊟Accession numbers

• Location: NC_014498 (1683726..1684622) NCBI
• BioCyc: SP670_RS08955 BioCyc
• MicrobesOnline:
• PneumoBrowse for strain D39V: SPV_1521 PneumoBrowse

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  361
  421
  481
  541
  601
  661
  721
  781
  841
  
  ATGGAAAGTGTCGGAGATGTACTCAAACGTCAACCAAGTCGTTTTCACTATCAAGATTTA
  GTTCAGAAAATCATGAAGGATCCTGATGTTGCGGCCTTTGTCCAGCAAGAATCCCTCAAT
  CAGGACGAGTTGAACCGTAGTATTTCCAAGTTTAACCAATACATCACTGAGAGAGATAAA
  TTCCTCCGAGGAGATACAGATTATATTGCCAAAGGCTACAAGCCTATATTAGTCATGAAC
  CATGGCTATGCGGATGTTTCTTATGAAGAAACTCCTGAACTAATCGCAGCTGAAAAAGAA
  GCGGCTATCAAGAAACGTCTCAACTTAATTAATTTTCCATCTAGCCTGAAAAATGTCAGT
  TTTTTAGATGTTTATCGTGATGATGTTCAGCGCTTAACTGTTCTAAAAAGAATGATAGAA
  TTTGTTAACGATTACCCCAATAATTTGAAAGGTCTTTACTTGTATGGAGACTTTGGTGTG
  GGTAAAAGTTTCATGGTGGCTGCCCTAGCTCATGATTTATCAGAAAAACGTGGTGTATCA
  TCCACTCTCCTCCACTATCCTAGCTTTGTCATTGATGTCAAAAATGCTATCAGTGATGGC
  AATGTTAAGACCTTAGTGGATGAGATTAAGCTTTCTGAAGTCCTGATTTTAGATGATATT
  GGTGCCGAGCAATCCACCACTTGGGTGCGTGATGAAATCCTGCAGGTCATTCTCCAATAT
  CGGATGCAGGAAAATTTACCGACCTTTTTCACCTCTAACTTCAACTTTGAAGATTTGGAG
  AAGCATTTCGCTAAAGGGAAAAATGGAAATGACGAAACCTGGGAAGCCAGACGCGTCATG
  GAACGCATCCGTTATTTGGCTGAGGAGACTCGTTTAGAAGGAGTAAACCGTCGATGA
  60
  120
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  840
  897
  

⊟Protein

⊟General

• locus tag: SP670_RS08955 [old locus tag: SP670_1804 ]
• symbol: DnaI
• description: primosomal protein DnaI
• length: 298
• theoretical pI: 5.3047
• theoretical MW: 34510.9
• GRAVY: -0.461074

⊟Function

• TIGRFAM:
  Genetic information processing DNA metabolism DNA replication, recombination, and repair chromosomal replication initiator protein DnaA (TIGR00362; HMM-score: 30.7)
  and 1 more
  Genetic information processing DNA metabolism DNA replication, recombination, and repair DnaA regulatory inactivator Hda (TIGR03420; HMM-score: 17.6)
• TheSEED: see SP670_1804
• PFAM:
  no clan defined DnaI_N; Primosomal protein DnaI N-terminus (PF07319; HMM-score: 81)
  and 16 more
  P-loop_NTPase (CL0023) IstB_IS21; IstB-like ATP binding protein (PF01695; HMM-score: 38.6)
  Bac_DnaA; Bacterial dnaA protein (PF00308; HMM-score: 27.6)
  RNA_helicase; RNA helicase (PF00910; HMM-score: 24.6)
  AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 19.9)
  AAA_16; AAA ATPase domain (PF13191; HMM-score: 17.8)
  KAP_NTPase; KAP family P-loop domain (PF07693; HMM-score: 17.2)
  DUF815; Protein of unknown function (DUF815) (PF05673; HMM-score: 16.9)
  AFG1_ATPase; AFG1-like ATPase (PF03969; HMM-score: 16.1)
  TsaE; Threonylcarbamoyl adenosine biosynthesis protein TsaE (PF02367; HMM-score: 15.7)
  AAA_22; AAA domain (PF13401; HMM-score: 13.4)
  CheY (CL0304) OKR_DC_1_N; Orn/Lys/Arg decarboxylase, N-terminal domain (PF03709; HMM-score: 12.9)
  P-loop_NTPase (CL0023) AAA_5; AAA domain (dynein-related subfamily) (PF07728; HMM-score: 12.8)
  no clan defined STI1; STI1 domain (PF17830; HMM-score: 12.3)
  Globin (CL0090) Bac_globin; Bacterial-like globin (PF01152; HMM-score: 12.2)
  P-loop_NTPase (CL0023) ArsA_ATPase; Anion-transporting ATPase (PF02374; HMM-score: 12.2)
  AAA_25; AAA domain (PF13481; HMM-score: 12)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.002619
  • TAT(Tat/SPI): 0.000262
  • LIPO(Sec/SPII): 0.000449
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI:
• RefSeq: WP_000446518 NCBI
• UniProt:

⊟Protein sequence

• MESVGDVLKRQPSRFHYQDLVQKIMKDPDVAAFVQQESLNQDELNRSISKFNQYITERDKFLRGDTDYIAKGYKPILVMNHGYADVSYEETPELIAAEKEAAIKKRLNLINFPSSLKNVSFLDVYRDDVQRLTVLKRMIEFVNDYPNNLKGLYLYGDFGVGKSFMVAALAHDLSEKRGVSSTLLHYPSFVIDVKNAISDGNVKTLVDEIKLSEVLILDDIGAEQSTTWVRDEILQVILQYRMQENLPTFFTSNFNFEDLEKHFAKGKNGNDETWEARRVMERIRYLAEETRLEGVNRR

⊟Experimental data

• protein localization:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Expression data

• PneumoExpress for strain D39V: SPV_1521 PneumoExpress

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications