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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae 70585
  • locus tag: SP70585_0164 [new locus tag: SP70585_RS00795 ]
  • pan locus tag?: PNEUPAN000742000
  • symbol: SP70585_0164
  • pan gene symbol?: —
  • synonym:
  • product: amylovoran biosynthesis glycosyltransferase AmsE

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP70585_0164 [new locus tag: SP70585_RS00795 ]
  • symbol: SP70585_0164
  • product: amylovoran biosynthesis glycosyltransferase AmsE
  • replicon: chromosome
  • strand: +
  • coordinates: 140292..141122
  • length: 831
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    GTGTCTGAAAAGCAAAAAATCAGCGTATTGATGTCGGTCTATATCAAGGAAAATCCGACA
    TTTTTAAAGGATGCTATTGAGAGTGTTCAAAATCAGACTCTGAAACCGAGCGAATTGGTT
    CTGGTTGAGGATGGGCCTTTGACACCTGAGCTCTATCAGGTGTTAGACCAGGTGGAGACT
    GAGTCTGAAATTCCAGTGAAACGCTATCCTCTTGAGCAGAATCAAGGTTTGGGTCTGGCT
    CTTCGACAGGGTGTTTTGCAGTGTCAGTACAATATCATCGCTCGTATGGATACGGATGAT
    ATAGCTGTTCCAGACCGTTTTGAGAAACAGCTTCAGTTAATGGAGAAGGACAAGCTTGAC
    CTATTAGGTGGACATATTGCAGAATTTATTGATAATCCTGATGAGATTGTTTCTTACCGT
    CGTGTTCCGACTCAACATGCAGATATTGTAGCTTATCAAAGGATGAGAAGTGCCTTTAAC
    CACATGACTGTCATGTTCAAGAAGGACATGGTTCTCAAGGCAGGCAACTATGAGGATGGC
    CTTTATATGGAAGATGACCTCCTCTGGCTCAATATGATTGCTGCAGGAGCCAAGACTGGA
    AATCTGGATCAAATCTTGTGTCAGGTTCGTGTCGGAGCAGGGATGTTTGAGCGTCGTGGG
    GGACTGCGTTACCTCAAACTCTATCGTCAGGCTCGTCAGCGCATGCTGAAGAGAGGGCAA
    ATTTCTTACATGGAGTATGCCAAGAGTGTTGCCATTCAGATGATTGTTGCCCTTTGTCCA
    GGATTTGTCAGACAGTTTATTTTTATGAAACTGTTACGAAAAAGCAAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    831

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP70585_0164 [new locus tag: SP70585_RS00795 ]
  • symbol: SP70585_0164
  • description: amylovoran biosynthesis glycosyltransferase AmsE
  • length: 276
  • theoretical pI: 8.404
  • theoretical MW: 31806.9
  • GRAVY: -0.25942

⊟Function[edit | edit source]

  • reaction:
    EC 2.-.-.-?  ExPASy
  • TIGRFAM:
    poly-beta-1,6 N-acetyl-D-glucosamine synthase (TIGR03937; EC 2.4.1.-; HMM-score: 28.6)
    and 3 more
    colanic acid biosynthesis glycosyltransferase WcaA (TIGR04017; EC 2.4.-.-; HMM-score: 21)
    putative glycosyltransferase, exosortase G-associated (TIGR03111; HMM-score: 17.6)
    mycofactocin system glycosyltransferase (TIGR03965; HMM-score: 16.8)
  • TheSEED  :
    • putative glycosyltransferase
  • PFAM:
    GT-A (CL0110) Glycos_transf_2; Glycosyl transferase family 2 (PF00535; HMM-score: 74.1)
    and 3 more
    Glyco_tranf_2_2; Glycosyltransferase like family 2 (PF10111; HMM-score: 25.6)
    Glyco_tranf_2_3; Glycosyltransferase like family 2 (PF13641; HMM-score: 21.4)
    no clan defined DUF2120; Uncharacterized protein conserved in archaea (DUF2120) (PF09893; HMM-score: 15.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 1.78
    • Cytoplasmic Membrane Score: 8.16
    • Cellwall Score: 0.06
    • Extracellular Score: 0.01
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.02
    • Cytoplasmic Membrane Score: 0.9682
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0117
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007955
    • TAT(Tat/SPI): 0.000108
    • LIPO(Sec/SPII): 0.000508
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSEKQKISVLMSVYIKENPTFLKDAIESVQNQTLKPSELVLVEDGPLTPELYQVLDQVETESEIPVKRYPLEQNQGLGLALRQGVLQCQYNIIARMDTDDIAVPDRFEKQLQLMEKDKLDLLGGHIAEFIDNPDEIVSYRRVPTQHADIVAYQRMRSAFNHMTVMFKKDMVLKAGNYEDGLYMEDDLLWLNMIAAGAKTGNLDQILCQVRVGAGMFERRGGLRYLKLYRQARQRMLKRGQISYMEYAKSVAIQMIVALCPGFVRQFIFMKLLRKSK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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