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serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
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Hu17
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serotype 1
INV200
serotype 14
JJA
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serotype 1
NCTC7466
serotype 2
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OXC141
serotype 3
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SP49
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SPN032672
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SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae 70585
  • locus tag: SP70585_0942 [new locus tag: SP70585_RS04675 ]
  • pan locus tag?: PNEUPAN001878000
  • symbol: SP70585_0942
  • pan gene symbol?: —
  • synonym:
  • product: ABC transporter, substrate-binding protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP70585_0942 [new locus tag: SP70585_RS04675 ]
  • symbol: SP70585_0942
  • product: ABC transporter, substrate-binding protein
  • replicon: chromosome
  • strand: -
  • coordinates: 870681..871496
  • length: 816
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGATTCGATTTTTAGTTTTAGCTGGCTATTTTGAACTGACTATTTACCTCCATCTGTCG
    GGCAAACTAAACCAGTACATCAACATGCACTATTCCTATCTGGCCTATATTTCCATGGTG
    CTTTCCTTTATCTTGGCAATTGTTCAATTGTATATCTGGATGAAGCAAGTCAAAACCCAC
    AGTCATCTGAACAGCCGATTGGCCAAGATGACGAGTATTTCTCTTCTGGCTATTCCACTT
    GTCATCGGCTTAACTTTCCCAACTGTTAGCTTGGATTCTCAGACCGTTTCTGCTAAAGGT
    TATCATTTCCCCCTATCGGAAGGAACGGATCTAGCCATTCAGACAAGCGAAGGGACGACA
    AGCCAATATTTGAAACCAGATACCAGTTCTTATTTTTCAAAATCAGCCTATGAAAAGGAA
    ATGCGAACGGCGGCGGATAAATACTTATCCCAAGATAGTATTCAGATCACTAATGAAAAC
    TATATGGAAGTCATGGAGGCTATCTACGACTATCCAGATGAATTTGAGGGCAAGACAATC
    CAGTTTACAGGCTTTGTCTATAACGACCCCAGTCATGCCAATAGTCAATTTCTGTTCCGA
    TTCGGCATTATCCACTGTATCGCAGATTCTGGTGTCTATGGATTGCTGACCAAGGGCAAT
    ACCCGGCAGTATGAAAACAACACTTGGATAACAGCCAAAGGAAAACTGGTCAATCACTAC
    CATAAAGAACTCAAACAAAACCTTCCAACCTTGGAAATCGACAGCTTTACCAAAGTCGAT
    AAACCAGAAAATCCCTATGTATATAGAGCTTTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    816

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP70585_0942 [new locus tag: SP70585_RS04675 ]
  • symbol: SP70585_0942
  • description: ABC transporter, substrate-binding protein
  • length: 271
  • theoretical pI: 7.02893
  • theoretical MW: 31090.3
  • GRAVY: -0.165314

⊟Function[edit | edit source]

  • TIGRFAM:
    TIGR03943 family protein (TIGR03943; HMM-score: 184.8)
  • TheSEED  :
    • UPF0703 protein YcgQ
  • PFAM:
    no clan defined DUF1980; Domain of unknown function (DUF1980) (PF09323; HMM-score: 217.4)
    and 4 more
    DUF3923; Protein of unknown function (DUF3923) (PF13061; HMM-score: 14.4)
    GPCR_A (CL0192) 7TM_GPCR_Srbc; Serpentine type 7TM GPCR chemoreceptor Srbc (PF10316; HMM-score: 13.8)
    no clan defined DUF4839; Domain of unknown function (DUF4839) (PF16127; HMM-score: 13.4)
    DUF1461; Protein of unknown function (DUF1461) (PF07314; HMM-score: 11.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.07
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.18
    • Extracellular Score: 0.21
    • Internal Helices: 3
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0006
    • Cytoplasmic Membrane Score: 0.9973
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.002
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001493
    • TAT(Tat/SPI): 0.000084
    • LIPO(Sec/SPII): 0.064321
  • predicted transmembrane helices (TMHMM): 3

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MIRFLVLAGYFELTIYLHLSGKLNQYINMHYSYLAYISMVLSFILAIVQLYIWMKQVKTHSHLNSRLAKMTSISLLAIPLVIGLTFPTVSLDSQTVSAKGYHFPLSEGTDLAIQTSEGTTSQYLKPDTSSYFSKSAYEKEMRTAADKYLSQDSIQITNENYMEVMEAIYDYPDEFEGKTIQFTGFVYNDPSHANSQFLFRFGIIHCIADSGVYGLLTKGNTRQYENNTWITAKGKLVNHYHKELKQNLPTLEIDSFTKVDKPENPYVYRAF

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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