PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

NCBI: 31-JAN-2014

⊟Summary

• organism: Streptococcus pneumoniae 70585
• locus tag: SP70585_1815 [new locus tag: SP70585_RS09015 ]
• pan locus tag^?: PNEUPAN003223000
• symbol: SP70585_1815
• pan gene symbol^?: —
• synonym:
• product: putative glycosyltransferase YibD

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SP70585_1815 [new locus tag: SP70585_RS09015 ]
• symbol: SP70585_1815
• product: putative glycosyltransferase YibD
• replicon: chromosome
• strand: -
• coordinates: 1687281..1687640
• length: 360
• essential: unknown

⊟Accession numbers

• Location: CP000918 (1687281..1687640) NCBI
• BioCyc: see SP70585_RS09015
• MicrobesOnline: 7477735 MicrobesOnline
• PneumoBrowse for strain D39V:

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  
  GTGGATGATAAAATTACGGTCATTGTACCAGTATACAATGTAGAAAACTATCTGAGGAAA
  TGTCTAGATAGTATCATTTCTCAAACATATAAAAATATTGAGATTGTTGTCGTTAATAAT
  GGTTCTACGGATGCTTCAGGTGAAATTTGTAAAGAATTTTCAGAAATGGATCACCGAATT
  CTCTATATAGAACAAGAAAATGCTGGTATTTCTGCCGCACGAAACACCGGTCTGAATAAT
  ATGTCCGGAAATTATGTGACCTTTGTGGATTCAGATGATTGGATTGAGTTAGATTATGTA
  GAAACCCTATATAAAAAAATAACAGAATATCAAGCTGATATTGCAGTTGGGAATTACTAG
  60
  120
  180
  240
  300
  360
  

⊟Protein

⊟General

• locus tag: SP70585_1815 [new locus tag: SP70585_RS09015 ]
• symbol: SP70585_1815
• description: putative glycosyltransferase YibD
• length: 119
• theoretical pI: 4.02377
• theoretical MW: 13534
• GRAVY: -0.272269

⊟Function

• reaction:
  EC 2.-.-.-?  ExPASy
• TIGRFAM:
  poly-beta-1,6 N-acetyl-D-glucosamine synthase (TIGR03937; EC 2.4.1.-; HMM-score: 66.8)
  putative glycosyltransferase, exosortase G-associated (TIGR03111; HMM-score: 64)
  mycofactocin system glycosyltransferase (TIGR03965; HMM-score: 58.6)
  and 11 more
  chitooligosaccharide synthase NodC (TIGR04242; EC 2.4.1.-; HMM-score: 50.2)
  Unknown function Enzymes of unknown specificity transferase 2, rSAM/selenodomain-associated (TIGR04283; EC 2.-.-.-; HMM-score: 41.8)
  colanic acid biosynthesis glycosyltransferase WcaA (TIGR04017; EC 2.4.-.-; HMM-score: 37.3)
  glycosyltransferase, TIGR04182 family (TIGR04182; HMM-score: 32)
  hopene-associated glycosyltransferase HpnB (TIGR03469; HMM-score: 28.1)
  peptide S-glycosyltransferase, SunS family (TIGR04195; EC 2.4.1.-; HMM-score: 28.1)
  colanic acid biosynthesis glycosyltransferase WcaE (TIGR04009; EC 2.4.-.-; HMM-score: 25.3)
  glycosyltransferase domain (TIGR04440; EC 2.-.-.-; HMM-score: 24.4)
  Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides rhamnosyltransferase (TIGR01556; EC 2.4.1.-; HMM-score: 23.9)
  glucose-1-phosphate thymidylyltransferase (TIGR01208; EC 2.7.7.24; HMM-score: 15.5)
  hopanoid biosynthesis associated glycosyl transferase protein HpnI (TIGR03472; HMM-score: 14.2)
• TheSEED  :
  • Beta-1,3-glucosyltransferase
• PFAM:
  GT-A (CL0110) Glycos_transf_2; Glycosyl transferase family 2 (PF00535; HMM-score: 124.1)
  and 6 more
  Glyco_tranf_2_2; Glycosyltransferase like family 2 (PF10111; HMM-score: 55.2)
  Glyco_tranf_2_3; Glycosyltransferase like family 2 (PF13641; HMM-score: 48.9)
  Glyco_tranf_2_4; Glycosyl transferase family 2 (PF13704; HMM-score: 23.4)
  Glyco_hydro_tim (CL0058) Glyco_hydro_1; Glycosyl hydrolase family 1 (PF00232; HMM-score: 14.8)
  GT-A (CL0110) Osmo_MPGsynth; Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) (PF09488; HMM-score: 14.3)
  DUF273; Protein of unknown function, DUF273 (PF03314; HMM-score: 13.7)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic Membrane
  • Cytoplasmic Score: 0.17
  • Cytoplasmic Membrane Score: 9.51
  • Cellwall Score: 0.16
  • Extracellular Score: 0.15
  • Internal Helices: 0
• DeepLocPro: Cytoplasmic
  • Cytoplasmic Score: 0.7258
  • Cytoplasmic Membrane Score: 0.1233
  • Cell wall & surface Score: 0.0015
  • Extracellular Score: 0.1494
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.013542
  • TAT(Tat/SPI): 0.000116
  • LIPO(Sec/SPII): 0.001094
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI:
• RefSeq: ACO16661 NCBI
• UniProt: C1C909 UniProt

⊟Protein sequence

• MDDKITVIVPVYNVENYLRKCLDSIISQTYKNIEIVVVNNGSTDASGEICKEFSEMDHRILYIEQENAGISAARNTGLNNMSGNYVTFVDSDDWIELDYVETLYKKITEYQADIAVGNY

⊟Experimental data

• protein localization:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: SP70585_1808 < SP70585_1809 < SP70585_1810 < SP70585_1811 < SP70585_1812 < SP70585_1813 < SP70585_1814 < SP70585_1815 < SP70585_1816

⊟Regulation

• regulator:

⊟Expression data

• PneumoExpress for strain D39V:

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications