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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae 70585
- locus tag: SP70585_2352 [new locus tag: SP70585_RS11670 ]
- pan locus tag?: PNEUPAN003931000
- symbol: SP70585_2352
- pan gene symbol?: yfmF
- synonym:
- product: peptidase, M16 family
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP70585_2352 [new locus tag: SP70585_RS11670 ]
- symbol: SP70585_2352
- product: peptidase, M16 family
- replicon: chromosome
- strand: -
- coordinates: 2166882..2168132
- length: 1251
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP000918 (2166882..2168132) NCBI
- BioCyc: see SP70585_RS11670
- MicrobesOnline: 7478267 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_2052 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1201ATGGAGTTAGTGCATGGAATTTCAACACATTTTATCCAATCAAAAAAGTTTAAAACAAAC
AAAATTACCGTGCGTTTTACCGCTCCATTATCCCTTGATACGATTGCAGGTCACATGTTG
AGTGCAAGTATGCTAGAGACTGCTAATCAGATGTACCCTACTTCTCAAGATTTGAGGAGA
CACTTGGCCAGTCTATACGGTACAGATATGTCAACCAATTGTTTCAGAAGAGGGCAAAGC
CACATTATAGAATTGACATTTACCTATGTTCGTGATGAGTTTTTAAGTAGGAAAAACGTG
CTAACCTCTCAGATTTTGGAACTTGTAAAAGAAACTCTTTTTTCACCCGTAGTAGTTGAT
AATGGGTTTGATCCGGCCTTATTTGAAATTGAGAAAAAACAATTGCTAGCAAGTTTAGCA
GCTGATATGGATGATTCTTTTTATTTTGCACATAAAGAATTGGATAAATTGTTTTTTCAT
GATGAACGTCTTCAATTGGAATATAGTGATTTACGAAATCGTATTTTAGATGAAACTCCA
CAAAGTTCTTATTCTTGTTTCCAAGAATTTTTAGCCAATGATCGAATAGATTTCTTTTTC
CTAGGTGATTTTAATGAGGTTGAAATTCAAAATGTATTAGAATCATTTGGCTTTAAAGGT
CGAAAAGGAGATGTGAAGGTTCAGTATTGTCAACCTTATTCTAATATCCTTCAGGAAGGT
ATGGTTCGGAAAAATGTGGGACAATCCATTTTGGAATTAGGTTATCATTACCGTTCTAAA
TATGGTGATGAACAACATTTACCCATGATTGTAATGAATGGTTTACTTGGTGGATTTGCT
CACTCTAAGCTCTTTACAAATGTCCGTGAAAATGCTGGATTAGCTTATACCATTTCAAGT
GAGCTTGATTTATTTAGTGGATTCTTGAGGATGTATGCTGGTATCAATCGAGAAAATCGT
AACCAGGCTCGTAAAATGATGAATAATCAACTGCTTGATTTAAAAAAAGGTTATTTTACA
GAGTTTGAGTTAAATCAGACCAAGGAAATGATTCGTTGGTCGTTGTTACTTTCTCAAGAT
AATCAATCTTCATTGATTGAACGTGCTTATCAAAATGCCTTATTTGGAAAATCTTCAGCA
GACTTTAAAAGTTGGATTGCAAAGCTTGAACAAATTGACAAAGATGCTATTTGTAGAGTA
GCTAATAATGTGAAACTACAAGCGATTTACTTTATGGAAGGAATAGAATGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP70585_2352 [new locus tag: SP70585_RS11670 ]
- symbol: SP70585_2352
- description: peptidase, M16 family
- length: 416
- theoretical pI: 6.3606
- theoretical MW: 48064.5
- GRAVY: -0.319231
⊟Function[edit | edit source]
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9591
- Cytoplasmic Membrane Score: 0.0303
- Cell wall & surface Score: 0.0002
- Extracellular Score: 0.0105
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.019183
- TAT(Tat/SPI): 0.0031
- LIPO(Sec/SPII): 0.001976
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MELVHGISTHFIQSKKFKTNKITVRFTAPLSLDTIAGHMLSASMLETANQMYPTSQDLRRHLASLYGTDMSTNCFRRGQSHIIELTFTYVRDEFLSRKNVLTSQILELVKETLFSPVVVDNGFDPALFEIEKKQLLASLAADMDDSFYFAHKELDKLFFHDERLQLEYSDLRNRILDETPQSSYSCFQEFLANDRIDFFFLGDFNEVEIQNVLESFGFKGRKGDVKVQYCQPYSNILQEGMVRKNVGQSILELGYHYRSKYGDEQHLPMIVMNGLLGGFAHSKLFTNVRENAGLAYTISSELDLFSGFLRMYAGINRENRNQARKMMNNQLLDLKKGYFTEFELNQTKEMIRWSLLLSQDNQSSLIERAYQNALFGKSSADFKSWIAKLEQIDKDAICRVANNVKLQAIYFMEGIE
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: SP70585_2343 < mreD < mreC < SP70585_2346 < SP70585_2347 < SP70585_2348 < pgsA < SP70585_2350 < SP70585_2351 < SP70585_2352
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_2052 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]