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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 15-DEC-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae 70585
- locus tag: SP70585_RS01035 [old locus tag: SP70585_0210 ]
- pan locus tag?: PNEUPAN000810000
- symbol: SP70585_RS01035
- pan gene symbol?: epsF
- synonym:
- product: glycosyltransferase family 4 protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP70585_RS01035 [old locus tag: SP70585_0210 ]
- symbol: SP70585_RS01035
- product: glycosyltransferase family 4 protein
- replicon: chromosome
- strand: +
- coordinates: 184893..185450
- length: 558
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_012468 (184893..185450) NCBI
- BioCyc: SP70585_RS01035 BioCyc
- MicrobesOnline: see SP70585_0210
- PneumoBrowse for strain D39V: SPV_0138 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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541ATGTCTCTATATCCTATTTTGATAATCGTATCTAGAGATTCAAAGGTTATTGATGATTAT
AAAAATTTAGATATTGCCTATGTTGATTGTACTCAATGTTCAAATAATTTTGAAACTGCC
TTACACGTTAAAAATATTTTAAAATTATTAAAAATCCAACTTATACACTGTCATGGCTAC
TCAACTAATTATTTTTTATATATGTTAAAAAAACTTGACAAGAATGGATTTGGAAAGGTT
AAGACAGTGATAACATGCCATGGATGGGTTGAATATAACTTAAAAAAGAAATTCTTGACT
TATTTTGATTTTTGGACATATTCTATGGGAGATGCTTTTATTTGTGTATCTGAAACTATG
AAAAAAAGATTGGAGAGTATAATAAAAAATAAGAAGATAGTTGCAATAAATAACGGAATT
AATGTATCAAATAGCGATTTAGATGTAGTAGGTGTTCAAGACTTTAAAAAAGAATTTTGT
ATTCCAAATAACAAAAAAATCATTTGTTATGTTGGAAGGCAAGAGAAGAAAAAATTTTTA
ACGAATTTCTTTTTTTGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP70585_RS01035 [old locus tag: SP70585_0210 ]
- symbol: SP70585_RS01035
- description: glycosyltransferase family 4 protein
- length: 185
- theoretical pI: 9.56725
- theoretical MW: 21619.3
- GRAVY: -0.0864865
⊟Function[edit | edit source]
- TIGRFAM: glycosyltransferase, GG-Bacteroidales peptide system (TIGR04157; EC 2.4.1.-; HMM-score: 33.6)and 3 moreEnergy metabolism Biosynthesis and degradation of polysaccharides glycogen synthase, Corynebacterium family (TIGR02149; HMM-score: 25)colanic acid biosynthesis glycosyltransferase WcaI (TIGR04007; EC 2.4.-.-; HMM-score: 12.8)sugar transferase, PEP-CTERM/EpsH1 system associated (TIGR03088; HMM-score: 11.3)
- TheSEED: see SP70585_0210
- PFAM: GT-B (CL0113) Glyco_transf_4; Glycosyltransferase Family 4 (PF13439; HMM-score: 62.6)and 4 moreGlyco_trans_4_4; Glycosyl transferase 4-like domain (PF13579; HMM-score: 22.6)Glyco_transf_5; Starch synthase catalytic domain (PF08323; HMM-score: 18.9)Glyco_trans_4_2; Glycosyl transferase 4-like (PF13477; HMM-score: 17.4)Transthyretin (CL0287) Pollen_Ole_e_1; Pollen protein Ole e 1 like (PF01190; HMM-score: 13.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.3966
- Cytoplasmic Membrane Score: 0.2535
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.3499
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.044394
- TAT(Tat/SPI): 0.000274
- LIPO(Sec/SPII): 0.017783
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_306293366 NCBI
- UniProt: see SP70585_0210
⊟Protein sequence[edit | edit source]
- MSLYPILIIVSRDSKVIDDYKNLDIAYVDCTQCSNNFETALHVKNILKLLKIQLIHCHGYSTNYFLYMLKKLDKNGFGKVKTVITCHGWVEYNLKKKFLTYFDFWTYSMGDAFICVSETMKKRLESIIKNKKIVAINNGINVSNSDLDVVGVQDFKKEFCIPNNKKIICYVGRQEKKKFLTNFFF
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0138 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.