From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 15-DEC-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae 70585
  • locus tag: SP70585_RS02525 [old locus tag: SP70585_0513 ]
  • pan locus tag?: PNEUPAN001289000
  • symbol: SP70585_RS02525
  • pan gene symbol?: —
  • synonym:
  • product: DAK2 domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP70585_RS02525 [old locus tag: SP70585_0513 ]
  • symbol: SP70585_RS02525
  • product: DAK2 domain-containing protein
  • replicon: chromosome
  • strand: +
  • coordinates: 458585..460252
  • length: 1668
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    GTGTCAAAAATTACTACTAGCTTATTTCAAGAAATGGTGCAGGCTGCATCAACTCGCTTG
    AATAAGCAAGCTGAATATGTCAATTCATTAAACGTCTTTCCAGTTCCAGATGGAGATACT
    GGGACAAATATGGGAATGACCATTGAAAATGGTGCTAAAGAAGTTGCAGACAAGCCAGCT
    TCTACAGTTGGAGAAGTAGCGAGCATTCTTGCCAAAGGGCTTTTGATGGGTGCGCGTGGG
    AACTCAGGAGTGATTACGTCTCAGCTTTTCCGTGGATTTTCCCAAGCTATCAAGGATAAA
    GACGAGTTAACAGGTCAAGACTTGGCTCTGGCCTTCCAATCAGGTGTGGAAGTTGCCTAT
    AAGGCAGTGATGAAACCTGTTGAAGGAACGATTTTAACAGTTTCTCGTGGAGCTGCTATC
    GGTGCTAAGAAAAAAGCTGAGCAAACAGATGACACTGTTGAAGTCATGCGCGCAGCCTTG
    GAAGGTGCTAAAACAGCTCTAGCTAAAACACCAGACATGCTTCCAGTATTGAAAGAAGTT
    GGCGTTGTGGACTCAGGTGGTCAAGGATTGGTCTTCATCTACGAAGGTTTCCTTTCAGCC
    CTTACTGGCGAATATATTGCATCTGAGGACTTTGTAGCGACTCCTGCCAACATGAGTGAG
    ATGATCAATGTAGAGCATCATAAGTCTGTAGCTGGTCACGTAGCGACTGAGGACATCACG
    TTTGGTTACTGTACTGAAATCATGGTAGCTCTTAAGCAAGGTCCAACCTATGCTAAAGAT
    TTTGACTACGATGAATTCCGTAACTACTTGGATGAGCTTGGGGATTCTCTCCTCGTTGTT
    AACGATGATGAAATTGTCAAAGTCCATGTTCATACAGAAGATCCAGGACTTGTTATGCAA
    GAAGGTCTCAAATATGGTAGCTTGGTCAAGGTAAAAGTTGACAATATGCGTAACCAACAC
    GAAGAACAGGTTGAGAAAGAAGCTACTCAAGTTATCAAGTCGGCTGAAGAAAAAGAGTAT
    GCTTTGATTGCTGTGGTGGCTGGTAAAGGTCTAGCAGATATCTTCTGTTCTCAAGGCGTG
    GATTATGTTATCGAAGGCGGTCAAACCATGAACCCTTCAACAGAAGACTTTATCAAGGCT
    GTTGAACAGGTCAATGCCCGTAACATCATCTTCTTGCCAAACAACAAGAACATCTTCATG
    GCAGCTCAATCTGCGGCAGAAGTTTTGGAGCAACCAGCAGTAGTGGTAGAGGCTCGCACT
    CTTCCTCAAGGTATGACAAGTCTTCTTGCCTTTGATCCAAGCAAGTCCATTGAAGAAAAC
    CAAGAGCGTATGACAGCTGCTCTTAGCGATGTCGTTAGCGGAAGCGTCACAACAGCCGTG
    CGTAATACAACGATCGATGGCTTAGAAATCCATGAAAACGATAATCTAGGTATGGTGGAT
    GGAAAAATTCTTGTGTCAAACCCTGATATGCACCAAACATTGACTGAAACCTTGAAACAT
    ATGTTGGATGAAGACAGTGAAATCGTAACCTTCTATGTCGGTGAAGACGGAAGCGAAGAA
    CTTGCCAATGAAATCGCTCAAGAAATCGTAGAAGAATTCGAAGACGTTGAAGTCGAGATT
    CACCAAGGTCAACAACCTGTTTACCCATACCTATTTAGTGTGGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1668

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP70585_RS02525 [old locus tag: SP70585_0513 ]
  • symbol: SP70585_RS02525
  • description: DAK2 domain-containing protein
  • length: 555
  • theoretical pI: 4.16584
  • theoretical MW: 60186.4
  • GRAVY: -0.143243

⊟Function[edit | edit source]

  • TIGRFAM:
    DAK2 domain fusion protein YloV (TIGR03599; HMM-score: 711.8)
    and 2 more
    dihydroxyacetone kinase, L subunit (TIGR02365; EC 2.7.-.-; HMM-score: 37.6)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Folic acid dihydroneopterin aldolase (TIGR00525; EC 4.1.2.25; HMM-score: 14.3)
  • TheSEED: see SP70585_0513
  • PFAM:
    EDD (CL0245) Dak1_2; Dihydroxyacetone kinase family (PF13684; HMM-score: 412.9)
    and 4 more
    no clan defined Dak2; DAK2 domain (PF02734; HMM-score: 142.4)
    GT-A (CL0110) Glyco_tranf_2_3; Glycosyltransferase like family 2 (PF13641; HMM-score: 14.9)
    KH (CL0007) KH_4; KH domain (PF13083; HMM-score: 11.7)
    no clan defined DUF6781; Family of unknown function (DUF6781) (PF20572; HMM-score: 7.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9903
    • Cytoplasmic Membrane Score: 0.0021
    • Cell wall & surface Score: 0.0005
    • Extracellular Score: 0.0071
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.037542
    • TAT(Tat/SPI): 0.00287
    • LIPO(Sec/SPII): 0.007083
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSKITTSLFQEMVQAASTRLNKQAEYVNSLNVFPVPDGDTGTNMGMTIENGAKEVADKPASTVGEVASILAKGLLMGARGNSGVITSQLFRGFSQAIKDKDELTGQDLALAFQSGVEVAYKAVMKPVEGTILTVSRGAAIGAKKKAEQTDDTVEVMRAALEGAKTALAKTPDMLPVLKEVGVVDSGGQGLVFIYEGFLSALTGEYIASEDFVATPANMSEMINVEHHKSVAGHVATEDITFGYCTEIMVALKQGPTYAKDFDYDEFRNYLDELGDSLLVVNDDEIVKVHVHTEDPGLVMQEGLKYGSLVKVKVDNMRNQHEEQVEKEATQVIKSAEEKEYALIAVVAGKGLADIFCSQGVDYVIEGGQTMNPSTEDFIKAVEQVNARNIIFLPNNKNIFMAAQSAAEVLEQPAVVVEARTLPQGMTSLLAFDPSKSIEENQERMTAALSDVVSGSVTTAVRNTTIDGLEIHENDNLGMVDGKILVSNPDMHQTLTETLKHMLDEDSEIVTFYVGEDGSEELANEIAQEIVEEFEDVEVEIHQGQQPVYPYLFSVE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SP70585_RS02525&oldid=27490"