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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 15-DEC-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae 70585
  • locus tag: SP70585_RS05385 [old locus tag: SP70585_1083 ]
  • pan locus tag?: PNEUPAN002062000
  • symbol: SP70585_RS05385
  • pan gene symbol?: —
  • synonym:
  • product: phage tail tip lysozyme

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP70585_RS05385 [old locus tag: SP70585_1083 ]
  • symbol: SP70585_RS05385
  • product: phage tail tip lysozyme
  • replicon: chromosome
  • strand: +
  • coordinates: 993731..996532
  • length: 2802
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_012468 (993731..996532) NCBI
  • BioCyc: SP70585_RS05385 BioCyc
  • MicrobesOnline: see SP70585_1083
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    ATGAAAGAGGATAAAAAGCTAGTCAAACAAGCTAGGCAAAACTTTCGAAGCAACTTAAAA
    TCAGCTCGTATGCATTATCGGAAAGAAGTTAGGACCTTAAAACAGACTGTTCCTAAAAAA
    GGACGATTTCGAAAACCAGCCCAAAATTCTCTGTTTCAAGATAAGAAAACAGAGTTAAAA
    CAAAATTTGCTAGGTAGCCAAAAGGAAGCAGAAGAGAAGTTTCTAAAGGAAATTACCTAT
    GTGTCTCCTAGACTGTTAAGGGTAAAGGAAATTAAGAATTATCGACTTCCCCAAGCCCAA
    GAGCGTTTGCGGACGGCAAAAAAACAATTGTCAGAAGTGAAGCTAGATGAGAAACAAAAG
    GCGGTCAATCCCAAGTTTCTCTTCCAAAAAGAAAACCCTTCCTCGAAGTCTCATTTTCAA
    TTTCACCAAGAAAAATCATTTGATCGACTAAGTGCTGAAAAAGAAGTGAGGTCTGCCAAA
    CGTGAGGTCAAACAACTCAAGAAAGTCCGAAAGTCTAAGAAAAACTCTACCAAGGTTAAA
    GGTGGATTAGGCTTAGCTATATCTGAATCGCTTGACCTGGTAGCACAGGATGATGATCTA
    GATGGTCTAAGAACCATAAAGGATACTAGTTTGAAAGCCAGACGCTATGGCAGATTTACC
    TATCAAGCTGGTAAAGTGGCGGTGAAAAGTGGACAGACTAGTGTGCGTTTTACAAAGACC
    AAAGTCGCTCATGGAAAGGAACGATTCCACAACTTCAAAAAGGGAAAAGGATTCACACGC
    CAGAAACCGCTTAAATCAAGAAGACGCTACCAAACCTTTTTAAAGCATGCCAGAAAGCAC
    AGTCTAGCAGGAATTAAGGGGATTGCCCAAGCCATTAAAGGAAGTCTGACCTTCTTTTCT
    GCAATTGCGGGAAATCCTTTGACTTGGATTGTCTCAGGCATTCTCTTGATACTCCTTTTG
    ATGATGAGCTTTTTCATGAGTGTTTCAGGAAGCAGTGTCATTCAACAAGATGAGATGGAG
    TTGACCAAGGCCTATACCCACATGACGTGGGAAGATGCGGAGCATACAAGAACCAACGAA
    AAAGGGATTACCTATTACACCAAGGTTGATGACGTTATGGTCTATATGAATCATCAATAT
    CAAGATTACAAGTTAGATGATGTTAAGGAAACAGGTGGTGCGATTTACAAAGCATTTCTC
    AGTCAAGTGTGGACAGACTTAAATGGTGGTGATTCTATTAAATCCATGTCTGACCTGTAT
    AAAGAACCTAGCTACAAGCTGTCTGATGAGGACCAGGAAGAACTAAAGGAGTTGACCGAA
    GAAGGCAACTATTTAGCCCTTCAAGAATTGGACAATCCCTTTCAGGGACAGACGGATGAG
    GATAGCTTAAACATGTCCTACCGATATGGTTATGAGGTCATTGATGAGAAACCAACACTT
    CATCACCATATTATCTTAGAAGCAAAAGAAGACCAAGTCATTGTGGCTCCGATGGATGGT
    AAGGTATCTCTTGATGGAGAGAACGTTATTCTGACATCTGGTAAGGGAGTGAATAGGACT
    AAACTAACCTTGTTTGGCATTCATTCAGGTAGAGTAAGTGAAAATCAACAAGTCTTGGCA
    GGAGACATTATTGGTCAAAACAAGGATGGAACGGGCCTAAAAGTCACCTATCAGAAGGTT
    GATGATGACACGGATAAGTTGGTCTATGTTAATCCAGCTTTCTACTTTCCAAAAGTGATC
    CAGGTTCAGACCACCATTCTTCCAACTATCGGTCAGTTTGGTGGTGATGAGTTTGAGAGA
    GCCAAGGCGATTTATGACTATCTCAAAAGTGAGGGTGCGACCAATCAAGCTATCGCAGCT
    ATCTTAGGAAATTGGTCGGTAGAATCCTCAATTAATCCAAAACGTGCGGAGGGCGACTAT
    CTATCTCCCCCTATTGGTGCGACAGACAGCTCGTGGGATGATGAGGGATGGCTCTCACTT
    AATGGTCCAACTATATACAATGGACGTTACCCAAATATTCTCAAACGTGGTTTGGGCTTA
    GGACAATGGACGGATACCGCAGATGGGTCACGCAGACATACCTTGTTGCTGGAATATGCC
    AAAGGAAAACATCAAAAGTGGTATGATTTGGGGTTACAACTGGACTTCATGTTGCATGGG
    GATAGTCCTTATTATTCCAATTGGTTAAAGGACTTCTTCAAAAATTCAGGTAGTCCAGCC
    AGTCTTGCCCAACTCTTTCTGATTTACTGGGAAGGCAATTCAGGAGATAAACTCATAGAG
    CGACAAACAAGAGCGACCGAGTGGTTCTATCAAATTGAAAAAGGCTTTAGCCAGCCAAAT
    GGTGGGACGGCACAAAGCGATCCAAAATCTCTTGAAGCTGTACGTGGAGACCTCTTTGAG
    AACTCTATTCCAAGAGGTGGTGACGGTATGGGTTATGCTTACGGCCAATGTACTTGGGGA
    GTCGCAGCCCGTATCAACCAACTGGGTTTAAAACTCAAAGGTAAAAATGGTGAGAAGATT
    CCGATTATCAGTACCATGGGTAATGGCCAGGATTGGGTGCGTACAGCCGCAAGCCTTGGT
    GGTGAAACAGGCACAATTCCACAAGCAGGAGCTATTCTCTCTTTTGCGGGAGGAGGACAT
    GGCACACCGACAGAATACGGACATGTGGCTTTTATCGAGAAAGTTTACCCAGATGGCTCA
    TTCCTTATCTCCGAAACCAATTACAATGGCAATCCCAACTATACCTTCCGTAAATTATCT
    GGAGTGGATAGCAGCTTGAGTTTTGCGTATACGACGAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2580
    2640
    2700
    2760
    2802

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP70585_RS05385 [old locus tag: SP70585_1083 ]
  • symbol: SP70585_RS05385
  • description: phage tail tip lysozyme
  • length: 933
  • theoretical pI: 9.83336
  • theoretical MW: 105072
  • GRAVY: -0.649946

⊟Function[edit | edit source]

  • TIGRFAM:
    ABC exporter membrane fusion protein, DevB family (TIGR02971; HMM-score: 12.6)
  • TheSEED: see SP70585_1083
  • PFAM:
    Lysozyme (CL0037) Phage_lysozyme2; Phage tail lysozyme (PF18013; HMM-score: 113.1)
    and 3 more
    Peptidase_CA (CL0125) CHAP; CHAP domain (PF05257; HMM-score: 57.4)
    Hybrid (CL0105) Peptidase_M23; Peptidase family M23 (PF01551; HMM-score: 20)
    HTH (CL0123) HTH_23; Homeodomain-like domain (PF13384; HMM-score: 12.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 2
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0014
    • Cytoplasmic Membrane Score: 0.8626
    • Cell wall & surface Score: 0.008
    • Extracellular Score: 0.128
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008333
    • TAT(Tat/SPI): 0.001534
    • LIPO(Sec/SPII): 0.001527
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKEDKKLVKQARQNFRSNLKSARMHYRKEVRTLKQTVPKKGRFRKPAQNSLFQDKKTELKQNLLGSQKEAEEKFLKEITYVSPRLLRVKEIKNYRLPQAQERLRTAKKQLSEVKLDEKQKAVNPKFLFQKENPSSKSHFQFHQEKSFDRLSAEKEVRSAKREVKQLKKVRKSKKNSTKVKGGLGLAISESLDLVAQDDDLDGLRTIKDTSLKARRYGRFTYQAGKVAVKSGQTSVRFTKTKVAHGKERFHNFKKGKGFTRQKPLKSRRRYQTFLKHARKHSLAGIKGIAQAIKGSLTFFSAIAGNPLTWIVSGILLILLLMMSFFMSVSGSSVIQQDEMELTKAYTHMTWEDAEHTRTNEKGITYYTKVDDVMVYMNHQYQDYKLDDVKETGGAIYKAFLSQVWTDLNGGDSIKSMSDLYKEPSYKLSDEDQEELKELTEEGNYLALQELDNPFQGQTDEDSLNMSYRYGYEVIDEKPTLHHHIILEAKEDQVIVAPMDGKVSLDGENVILTSGKGVNRTKLTLFGIHSGRVSENQQVLAGDIIGQNKDGTGLKVTYQKVDDDTDKLVYVNPAFYFPKVIQVQTTILPTIGQFGGDEFERAKAIYDYLKSEGATNQAIAAILGNWSVESSINPKRAEGDYLSPPIGATDSSWDDEGWLSLNGPTIYNGRYPNILKRGLGLGQWTDTADGSRRHTLLLEYAKGKHQKWYDLGLQLDFMLHGDSPYYSNWLKDFFKNSGSPASLAQLFLIYWEGNSGDKLIERQTRATEWFYQIEKGFSQPNGGTAQSDPKSLEAVRGDLFENSIPRGGDGMGYAYGQCTWGVAARINQLGLKLKGKNGEKIPIISTMGNGQDWVRTAASLGGETGTIPQAGAILSFAGGGHGTPTEYGHVAFIEKVYPDGSFLISETNYNGNPNYTFRKLSGVDSSLSFAYTTK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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