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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 15-DEC-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae 70585
- locus tag: SP70585_RS06595 [old locus tag: SP70585_1327 ]
- pan locus tag?: PNEUPAN002517000
- symbol: SP70585_RS06595
- pan gene symbol?: —
- synonym:
- product: DUF389 domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP70585_RS06595 [old locus tag: SP70585_1327 ]
- symbol: SP70585_RS06595
- product: DUF389 domain-containing protein
- replicon: chromosome
- strand: -
- coordinates: 1230885..1231928
- length: 1044
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_012468 (1230885..1231928) NCBI
- BioCyc: SP70585_RS06595 BioCyc
- MicrobesOnline: see SP70585_1327
- PneumoBrowse for strain D39V: SPV_1121 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1021GTGACAAATAATAAACTGTATTCGTTGATAGAATTTAGAAATAAAATATATGAAGAATTA
GAACTTTCCAGAAGTGATTTAGCGATTTTACTATGTGCCATGCTTATCGCCTCTATCGGA
TTAAATATGGATTCGACTCCCGTGATTATTGGAGCCATGTTAATCTCTCCTTTGATGACA
CCTATTCTGGGAGTGGGGCTCTCTCTAGCTATATTTGATTTTAAATTGTTAAGAAAATCT
TTTAAAATATTAGCTATTCAAATTCTTGCCAGTCTAATAGCTTCAACACTTTATTTTTGT
CTTTCTCCCATTTCGTATGCTAGTTCGGAGATTGTTGCTAGAACCTCTCCGACTATTTGG
GATGTTCTCATTGCTTTTGTAGGAGGGATAGCAGGTATTATTGGTGCTAGGAAAAAAGAG
ACCAATAATATTGTTCCTGGTGTTGCTATTGCAACCGCCTTGATGCCTCCTCTTTGTACA
GTAGGTTATGCTATTGCTTCTGCTAATCCAAAATTTATCATAGGCTCCTCTTACCTATTC
CTCATCAATTGTAGCTTTATTGTCATTGCGACTTATATAGGTGTTAGGTTGATGATGGTT
AAGAAACATTATTTTAAAGATAATGAAGAAGACTCTAAAATGCGTAGGATTTTGCTTCTA
GTTGCTGTTTTGCTGATGATTCCGAGTTTTATTTCTGCAACGACTTTAGTGAGAGAAACG
TTGAAAAAAGAGTCCCTTAAGAAATTTATATCAGAGCAGTTTCAGGGGTATAATATTTTG
AAAAAAACCTATTCTAAAAAGACTCATACCCTAAAGCTAACCATTTCAGGAAATTATTTG
ACAGAAGAAGAACTCGATATGATTTCAAGTAAGAGAGGTGACTATGGTTTAAGTGATGTT
TCTGTTCAAGTTTCACAATTGTCTGATTCAGAACAACTTAGTAAGGAAGAGCTGGTGGAG
TATTTCTTCCAGTATATCAAGGATAAGGAAGCAAAAGAAAAGGAGAAGGCCAATAAATTT
GATACAGAGTCTGAGGAGCAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP70585_RS06595 [old locus tag: SP70585_1327 ]
- symbol: SP70585_RS06595
- description: DUF389 domain-containing protein
- length: 347
- theoretical pI: 8.52212
- theoretical MW: 38748.4
- GRAVY: 0.257637
⊟Function[edit | edit source]
- TIGRFAM: uncharacterized hydrophobic domain (TIGR00271; HMM-score: 110.5)Hypothetical proteins Conserved TIGR00341 family protein (TIGR00341; HMM-score: 95.2)
- TheSEED: see SP70585_1327
- PFAM: no clan defined DUF389; Domain of unknown function (DUF389) (PF04087; HMM-score: 132.2)and 6 moreDUF624; Protein of unknown function, DUF624 (PF04854; HMM-score: 16)Acyl_transf_3 (CL0316) DUF418; Protein of unknown function (DUF418) (PF04235; HMM-score: 13.8)no clan defined SWIB; SWIB/MDM2 domain (PF02201; HMM-score: 13.5)PHO4; Phosphate transporter family (PF01384; HMM-score: 9.3)Wzz; Chain length determinant protein (PF02706; HMM-score: 6.7)DUF6773; Family of unknown function (DUF6773) (PF20563; HMM-score: 6.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 7
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.9966
- Cell wall & surface Score: 0
- Extracellular Score: 0.0033
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.013075
- TAT(Tat/SPI): 0.00121
- LIPO(Sec/SPII): 0.004446
- predicted transmembrane helices (TMHMM): 7
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_015898771 NCBI
- UniProt: see SP70585_1327
⊟Protein sequence[edit | edit source]
- MTNNKLYSLIEFRNKIYEELELSRSDLAILLCAMLIASIGLNMDSTPVIIGAMLISPLMTPILGVGLSLAIFDFKLLRKSFKILAIQILASLIASTLYFCLSPISYASSEIVARTSPTIWDVLIAFVGGIAGIIGARKKETNNIVPGVAIATALMPPLCTVGYAIASANPKFIIGSSYLFLINCSFIVIATYIGVRLMMVKKHYFKDNEEDSKMRRILLLVAVLLMIPSFISATTLVRETLKKESLKKFISEQFQGYNILKKTYSKKTHTLKLTISGNYLTEEELDMISSKRGDYGLSDVSVQVSQLSDSEQLSKEELVEYFFQYIKDKEAKEKEKANKFDTESEEQ
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1121 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]