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serotype 4
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Hungary19A-6
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EF3030
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70585
serotype 5
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serotype 3
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SPN994038
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serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 15-OCT-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae 70585
  • locus tag: SP70585_RS09175 [old locus tag: SP70585_1847 ]
  • pan locus tag?: PNEUPAN003274000
  • symbol: SP70585_RS09175
  • pan gene symbol?: araQ_3
  • synonym:
  • product: carbohydrate ABC transporter permease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP70585_RS09175 [old locus tag: SP70585_1847 ]
  • symbol: SP70585_RS09175
  • product: carbohydrate ABC transporter permease
  • replicon: chromosome
  • strand: -
  • coordinates: 1716436..1717281
  • length: 846
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGAAACGATTTAAACCAACAACAATCTTAGAATATATTCTGTTAACTTTATTGGCAGGA
    CTCTTCCTTTTTCCTATGGTTTGGATGGTAGTTTCAGCTATGAAGCCAGAAGCGGATGTT
    TATAAAAATTTGACTAGTTGGCAAGCCTTCTTACCAAGTTTAAATCCCGCTGATTGGTTT
    AAACCTTATCAGGAAGTATTTGAGCGCTTTAGTATTTTTACATATCTAGGGAACAGCATT
    TTTTATGCTGGAACGTTTGCTATTGGTTCTATTATTGTCAATGCACTGGCCGGTTTCGCT
    TTTGCAAAAGTCAATTTTTCAGGTAAGAAAATTTTATTTGGTTTCTTACTTGCTTTACTT
    ATTATTCCAGTGGAAACTGTGTTAATTCCACAATTTACCATTATCAATTCCTTAGGTTTG
    GTCAATAATCGTTTTGCAGTTATTATTCCAGGATTGGCGAGTGTATTTAATATTTACTTA
    TTTAGGAATTTCTTTATTGCAATTCCAGAAGAGATTCTTGAGTCTGCAAAGATGGACGGA
    GCAAGTATCGTTAGAATTTTCTTTAGAATTATGCTTCCAATGTCTAAACCTGCAGTTGCT
    ACAGTTGGTGTTTTATCATTTATTTCAAGCTGGAATGATTATATCTGGCCATTGATGGTT
    TTGACAGATTCTTCTAAATTTTCAATGCAGGTTGCAATTACAACTATTAATACAACTCAA
    CCAGTTTATATCAATCAGGTAATGGCTGTATTAACTATTTCAACGATTCCGTTGATTTTG
    GTCTATGTAGTCGCTCAGAAATATATTGTTCAAGGTCTGGGTGGTTCCGGAACTGGAATA
    AAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    846

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP70585_RS09175 [old locus tag: SP70585_1847 ]
  • symbol: SP70585_RS09175
  • description: carbohydrate ABC transporter permease
  • length: 281
  • theoretical pI: 9.86564
  • theoretical MW: 31293.1
  • GRAVY: 0.793238

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Anions molybdate ABC transporter, permease protein (TIGR02141; HMM-score: 23.1)
    and 2 more
    NifC-like ABC-type porter (TIGR01581; HMM-score: 18.4)
    2-aminoethylphosphonate ABC transporter, permease protein (TIGR03226; HMM-score: 14.7)
  • TheSEED: see SP70585_1847
  • PFAM:
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 71.3)
    and 1 more
    no clan defined m04gp34like; Immune evasion protein (PF12216; HMM-score: 13.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.353835
    • TAT(Tat/SPI): 0.009869
    • LIPO(Sec/SPII): 0.015265
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKRFKPTTILEYILLTLLAGLFLFPMVWMVVSAMKPEADVYKNLTSWQAFLPSLNPADWFKPYQEVFERFSIFTYLGNSIFYAGTFAIGSIIVNALAGFAFAKVNFSGKKILFGFLLALLIIPVETVLIPQFTIINSLGLVNNRFAVIIPGLASVFNIYLFRNFFIAIPEEILESAKMDGASIVRIFFRIMLPMSKPAVATVGVLSFISSWNDYIWPLMVLTDSSKFSMQVAITTINTTQPVYINQVMAVLTISTIPLILVYVVAQKYIVQGLGGSGTGIK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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