From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 17-JAN-2018

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae AP200
  • locus tag: SPAP_0480 [new locus tag: SPAP_RS02375 ]
  • pan locus tag?: PNEUPAN001355000
  • symbol: SPAP_0480
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPAP_0480 [new locus tag: SPAP_RS02375 ]
  • symbol: SPAP_0480
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 449235..450632
  • length: 1398
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    TTGAAACGTTGGTATGAACATGAGTTTAATCCATACCTAAATAAAGAAAAATTCTCAAAT
    GAATTAGTACAAGAATTGAGTGATAGGTTGGATAAAGAATTGCAAAAAAGAGGTCTTATT
    CATCATCGTGTTGGTCATGGATGGACAGGTGAGGTTTTAGGTTACTCTTCAAAATTTGGC
    TGGGAATCAGGTCTTAGTATTTCAGAGGAGAAGAAACCCTATGTCGCTGAAATAAACGGG
    AAACGAGAATTATTTAATACGGCTCCGATTTTAACCAGTCTGGATTTTTCAAATCCAGAT
    GTGGCGGATAAGATGGTAGAAATTATCAAGGATTATGCCAAGAAAAGACCTGATGTTAAC
    TACTTACATGTATGGTTGTCGGATGCTCGTAATAATATTTGTGAATGCGAAAACTGTAGA
    CAAGAATTGGTTTCGGATCAGTATATTCGTATTCTCAATCAATTGGATAGGGCTTTAACG
    AGTGAGGGATTAGATACAAAGATTTGTTTTCTGCTTTACCATGAGTTGTTATGGGCGCCT
    CAGAAAGAAAAATTAGATAATCCTGAACGCTTTACCATGATGTTTGCACCGATTACAAGA
    ACATTTGAAATGAGTTATGCAGATGTAGATTTTGACAATTCCATACCTACGCCTAAACCT
    TATCTGCGTAATAAAATTATACTTCCGAATTCTCTTGAGGAAAATTTATCTTATCTTTTT
    GAGTGGCAAAAAACATTTAAAGGAGATAGTTTCGTATATGACTATCCTTTAGGGCGTGCT
    CATTATGGCGATTTAGGCTATATGAAAATTAGTCAAACCATTTACAGAGATGTATCTTAT
    CTTTCTAACCTACATTTGAACGGTTACATTTCGTGTCAAGAATTACGTGCCGGATTCCCT
    CATAATTTTCCTAATTATGTTATGGGGGAAATGCTCTGGAAGAAGACAAGAAGTTATGAA
    GAATTGATTGAAGAATACTTTTCTGCTTTGTATGGGTCAAATTGGCAGTCTGTTGTTGAA
    TATTTAGAAAAATTATCCAGTTATTCCTCATGTGATTATTTTAATGCAATTGGCAGTCGT
    CAAAATGATGTTTTAGCGAATCATTATTATATAGCTTACAATCTAGCTGATAATTTTTTG
    CCAATTATTGAGGAAAATATTTCTAAGTTATTAAATAGTCAAAAGGATGAATGGAAACAG
    CTCAGTTATCATCGTGAATATGTTGTTAAGATGGCGAAGGCTTTATATCTTCAAGCAACC
    GGAAAAACAAGGCAAGCTCAAGATGAATGGAGAAATGTGTTGAATTATATCCGTGGGCAC
    GAATTGCTATTTCAATCTAATTTGGATGTTTATCGTGTAATTGAAGTAGCAAAAAATTAC
    GCTGGTTTCCACTTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1398

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPAP_0480 [new locus tag: SPAP_RS02375 ]
  • symbol: SPAP_0480
  • description: hypothetical protein
  • length: 465
  • theoretical pI: 6.07465
  • theoretical MW: 54847.6
  • GRAVY: -0.549462

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG01114224: hypothetical protein
  • ⊞PFAM:
    Glyco_hydro_tim (CL0058) DUF4838; Domain of unknown function (DUF4838) (PF16126; HMM-score: 77.6)
    and 2 more
    no clan defined Fur_reg_FbpB; Fur-regulated basic protein B (PF13040; HMM-score: 12.5)
    SPATA1_C; Spermatogenesis-associated C-terminus (PF15743; HMM-score: 8.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.020222
    • TAT(Tat/SPI): 0.004857
    • LIPO(Sec/SPII): 0.000791
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ADM84073 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKRWYEHEFNPYLNKEKFSNELVQELSDRLDKELQKRGLIHHRVGHGWTGEVLGYSSKFGWESGLSISEEKKPYVAEINGKRELFNTAPILTSLDFSNPDVADKMVEIIKDYAKKRPDVNYLHVWLSDARNNICECENCRQELVSDQYIRILNQLDRALTSEGLDTKICFLLYHELLWAPQKEKLDNPERFTMMFAPITRTFEMSYADVDFDNSIPTPKPYLRNKIILPNSLEENLSYLFEWQKTFKGDSFVYDYPLGRAHYGDLGYMKISQTIYRDVSYLSNLHLNGYISCQELRAGFPHNFPNYVMGEMLWKKTRSYEELIEEYFSALYGSNWQSVVEYLEKLSSYSSCDYFNAIGSRQNDVLANHYYIAYNLADNFLPIIEENISKLLNSQKDEWKQLSYHREYVVKMAKALYLQATGKTRQAQDEWRNVLNYIRGHELLFQSNLDVYRVIEVAKNYAGFHL

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPAP_0480&oldid=42673"