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serotype 1

NCBI: 17-JAN-2018

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae AP200
  • locus tag: SPAP_0687 [new locus tag: SPAP_RS03410 ]
  • pan locus tag?: PNEUPAN001656000
  • symbol: SPAP_0687
  • pan gene symbol?: glnP3b
  • synonym:
  • product: ABC-type amino acid transport system, permease component

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPAP_0687 [new locus tag: SPAP_RS03410 ]
  • symbol: SPAP_0687
  • product: ABC-type amino acid transport system, permease component
  • replicon: chromosome
  • strand: -
  • coordinates: 658921..659598
  • length: 678
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGCAGGATTCGGGAATCCAAGTACTCTTTCAGGGAAATAATCTCCTGAGAATCTTACAG
    GGATTGGGCGTTACGATTGAGATATCCATCCTGTCTGTCCTCTTATCCATGATGTTCAGA
    ACAGTCATGGGAATCATCATGACCTCCCATTCTAGAATCATACGATTTTTAACACGATTG
    TATCTGGAATTTATCCGTATCATGCCCCAGCTGGTGCTACTCTTCATCGTTTACTTTGGC
    TTGGCTCGAAACTTTAATATCAATATCTCAGGTGAGACTTCAGCTATTATCGTTTTTACC
    CTCTGGGGAACAGCTGAAATGGGAGACTTGGTACGTGGAGCTATCACTTCTCTCCCTAAA
    CATCAGTTTGAAAGTGGACAGGCACTCGGCTTGACTAATGTTCAACTTTACTACCACATC
    ATCATCCCACAAGTCTTAAGAAGACTGCTACCGCAGGCTATCAATCTTGTCACTCGGATG
    ATTAAAACCACTTCATTAGTTGTTTTGATTGGGGTTGTGGAAGTGACCAAAGTTGGACAA
    CAAATCATCGATAGCAATCGCCTGACCATCCCAACTGCTTCATTTTGGATTTATGGAACC
    ATTCTAGTCTTATATTTCGCAGTTTGCTACCCTATTTCCAAACTATCCACTCACTTAGAA
    AAACATTGGAGAAACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    678

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPAP_0687 [new locus tag: SPAP_RS03410 ]
  • symbol: SPAP_0687
  • description: ABC-type amino acid transport system, permease component
  • length: 225
  • theoretical pI: 10.3742
  • theoretical MW: 25479.2
  • GRAVY: 0.626667

⊟Function[edit | edit source]

  • TIGRFAM:
    ectoine/hydroxyectoine ABC transporter, permease protein EhuC (TIGR03004; HMM-score: 108.7)
    and 3 more
    ectoine/hydroxyectoine ABC transporter, permease protein EhuD (TIGR03003; HMM-score: 82.3)
    Metabolism Transport and binding proteins Amino acids, peptides and amines amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family (TIGR01726; HMM-score: 68.9)
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, permease protein PhnE (TIGR01097; HMM-score: 39.8)
  • TheSEED  :
    • ABC-type amino acid transport system, permease component
  • PFAM:
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 55.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001793
    • TAT(Tat/SPI): 0.000867
    • LIPO(Sec/SPII): 0.001227
  • predicted transmembrane helices (TMHMM): 3

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ADM84280 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MQDSGIQVLFQGNNLLRILQGLGVTIEISILSVLLSMMFRTVMGIIMTSHSRIIRFLTRLYLEFIRIMPQLVLLFIVYFGLARNFNINISGETSAIIVFTLWGTAEMGDLVRGAITSLPKHQFESGQALGLTNVQLYYHIIIPQVLRRLLPQAINLVTRMIKTTSLVVLIGVVEVTKVGQQIIDSNRLTIPTASFWIYGTILVLYFAVCYPISKLSTHLEKHWRN

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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