Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 07-FEB-2021
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae AP200
- locus tag: SPAP_RS06095 [old locus tag: SPAP_1232 ]
- pan locus tag?: PNEUPAN002470000
- symbol: SPAP_RS06095
- pan gene symbol?: xseB
- synonym:
- product: exodeoxyribonuclease VII small subunit
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPAP_RS06095 [old locus tag: SPAP_1232 ]
- symbol: SPAP_RS06095
- product: exodeoxyribonuclease VII small subunit
- replicon: chromosome
- strand: -
- coordinates: 1169186..1169398
- length: 213
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_014494 (1169186..1169398) NCBI
- BioCyc: SPAP_RS06095 BioCyc
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1066 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181ATGTCAAAACAAAAGAAATTTGAGGAAAATCTAGCAGAACTGGAAACCATTGTCCAAAGT
TTGGAAAATGGTGAAATTGATCTGGAAGATGCGATTACTGCCTTTCAAAAGGGCATGGTC
TTGTCAAAAGAGCTCCAAGCTACGCTGGACAAGGCTGAAAAGACCTTGGTCAAGGTCATG
CAAGAAGACGGAACAGAAAGTGATTTTGAATGA60
120
180
213
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPAP_RS06095 [old locus tag: SPAP_1232 ]
- symbol: SPAP_RS06095
- description: exodeoxyribonuclease VII small subunit
- length: 70
- theoretical pI: 4.01831
- theoretical MW: 7893.83
- GRAVY: -0.561429
⊟Function[edit | edit source]
- reaction: EC 3.1.11.6? ExPASyExodeoxyribonuclease VII Exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield nucleoside 5'-phosphates
- TIGRFAM: DNA metabolism Degradation of DNA exodeoxyribonuclease VII, small subunit (TIGR01280; EC 3.1.11.6; HMM-score: 73.6)
- TheSEED: see SPAP_1232
- PFAM: no clan defined Exonuc_VII_S; Exonuclease VII small subunit (PF02609; HMM-score: 67.7)and 5 moreTrimer_CC; Trimerisation motif (PF08954; HMM-score: 15.4)DUF6687; Family of unknown function (DUF6687) (PF20392; HMM-score: 13.7)KxDL; Uncharacterized conserved protein (PF10241; HMM-score: 13.2)Syntaxin-6_N; Syntaxin 6, N-terminal (PF09177; HMM-score: 12.9)DUF3323; Protein of unknown function N-terminus (DUF3323) (PF11796; HMM-score: 12.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002159
- TAT(Tat/SPI): 0.000379
- LIPO(Sec/SPII): 0.000267
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000043231 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MSKQKKFEENLAELETIVQSLENGEIDLEDAITAFQKGMVLSKELQATLDKAEKTLVKVMQEDGTESDFE
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1066 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.