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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 07-FEB-2021
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae AP200
- locus tag: SPAP_RS07575 [old locus tag: SPAP_1537 ]
- pan locus tag?: PNEUPAN002839000
- symbol: SPAP_RS07575
- pan gene symbol?: IS1239
- synonym:
- product: IS30 family transposase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPAP_RS07575 [old locus tag: SPAP_1537 ]
- symbol: SPAP_RS07575
- product: IS30 family transposase
- replicon: chromosome
- strand: -
- coordinates: 1445106..1446056
- length: 951
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_014494 (1445106..1446056) NCBI
- BioCyc: SPAP_RS07575 BioCyc
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1342 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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901ATACTACAAAAGGCGAACAAAGGGAAATCAAATAGAGAAATTGCCTCTCTACTTGGAAAA
GCTCCTCAAACTATCCACACTGAAATCAAGCGTAGGACAGTCCGACAATGTCTTGGAAAA
GGGCGCTTCAAAGAGGTTTATTCTGCCGACTATGCTCAACAGTCTTATGAAAACAATCGC
AAGCGCTCGGTCAAGAAATCAAGCTTGACCAAGGAACTAAAGGAAAAGATTCTCCACTAT
CATAACCAAAAATTTTCGCCTGAAATGATGGTTATGGCTAAAGGGGTTAACGTGGGAATT
TCAACCATTTACTATTGGATTCATCATGGAAAATTGGGGTTAAGCAAGCAGGATTTGCTT
TACCCTAGAAAAGGAAAAGCGCTTAAGAAACAGGCTAGCACCAACTTTAAACCTGCTGGT
CAATCCATCGAACAGCGGCCTGAAGCTATCAATCTTCGCTTGGAGAATGGGCATTATGAG
ATTGATACGGTTCTACTTACGAGAGCGAAAAACTACTGCTTGCTTGTCTTGACGGATCGA
AAGAGTAGACATCAGATCATCCGATTGATTCCAAATAAAAGTGCTGAGGTGGTCAATCAG
GCTCTAAAACTCATCTTAAAACAACACAAGATTCTTTCCATCACGGCAGATAATGGAACG
GAATTCAATCGCTTGTTTGATGTATTTGCTGAGGAGCACATCTATTATGCGCACCCCTAT
GCCTCTTGGGAAAGGGGAACTAATGAGAATCACAACAGGCTCATTCGTAGATGGTTACCT
AAGGGAACCAAGAAAATGACTCCCAAAGAAGTCGCATTCATCGAAAAGTGGATTAACAAC
TATCCTAAAAAATGCTTGGACTACAAGTCACCCAGAGAAGACTTCTGGATGGCTAACTTG
AACTTGAAATTTAGCAAAATGGAAATAATTTTTATTAAACGCTTCCAATAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPAP_RS07575 [old locus tag: SPAP_1537 ]
- symbol: SPAP_RS07575
- description: IS30 family transposase
- length: 316
- theoretical pI: 10.6375
- theoretical MW: 37076.8
- GRAVY: -0.703165
⊟Function[edit | edit source]
- TIGRFAM: Unknown function General DNA binding domain, excisionase family (TIGR01764; HMM-score: 14)RNA polymerase sigma-70 factor, TIGR02960 family (TIGR02960; HMM-score: 12)and 1 moreRNA polymerase sigma-70 factor, Bacteroides expansion family 1 (TIGR02985; HMM-score: 9.6)
- TheSEED: see SPAP_1537
- PFAM: HTH (CL0123) HTH_38; Helix-turn-helix domain (PF13936; HMM-score: 40.8)and 11 moreRNase_H (CL0219) rve; Integrase core domain (PF00665; HMM-score: 22.3)HTH (CL0123) HTH_17; Helix-turn-helix domain (PF12728; HMM-score: 18.9)HTH_23; Homeodomain-like domain (PF13384; HMM-score: 18.5)Sigma70_r4_2; Sigma-70, region 4 (PF08281; HMM-score: 15.6)GerE; Bacterial regulatory proteins, luxR family (PF00196; HMM-score: 15.2)PKinase (CL0016) PK_Tyr_Ser-Thr; Protein tyrosine and serine/threonine kinase (PF07714; HMM-score: 14.3)no clan defined DnaB_2; Replication initiation and membrane attachment (PF07261; HMM-score: 13.5)Abi_2; Abi-like protein (PF07751; HMM-score: 13.3)HTH (CL0123) HTH_24; Winged helix-turn-helix DNA-binding (PF13412; HMM-score: 12.6)HTH_29; Winged helix-turn helix (PF13551; HMM-score: 12.4)HTH_28; Helix-turn-helix domain (PF13518; HMM-score: 12.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.013568
- TAT(Tat/SPI): 0.004847
- LIPO(Sec/SPII): 0.003002
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_138038048 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MLQKANKGKSNREIASLLGKAPQTIHTEIKRRTVRQCLGKGRFKEVYSADYAQQSYENNRKRSVKKSSLTKELKEKILHYHNQKFSPEMMVMAKGVNVGISTIYYWIHHGKLGLSKQDLLYPRKGKALKKQASTNFKPAGQSIEQRPEAINLRLENGHYEIDTVLLTRAKNYCLLVLTDRKSRHQIIRLIPNKSAEVVNQALKLILKQHKILSITADNGTEFNRLFDVFAEEHIYYAHPYASWERGTNENHNRLIRRWLPKGTKKMTPKEVAFIEKWINNYPKKCLDYKSPREDFWMANLNLKFSKMEIIFIKRFQ
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1342 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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