From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 07-FEB-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae AP200
  • locus tag: SPAP_RS07835 [old locus tag: SPAP_1587 ]
  • pan locus tag?: PNEUPAN002950000
  • symbol: rapZ
  • pan gene symbol?: rapZ
  • synonym:
  • product: RNase adapter RapZ

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPAP_RS07835 [old locus tag: SPAP_1587 ]
  • symbol: rapZ
  • product: RNase adapter RapZ
  • replicon: chromosome
  • strand: -
  • coordinates: 1496606..1497496
  • length: 891
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_014494 (1496606..1497496) NCBI
  • BioCyc: SPAP_RS07835 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1396 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGACAAAGAAACAACTTCACTTGGTGATTGTGACAGGGATGAGTGGCGCAGGGAAAACT
    GTAGCCATTCAGTCCTTCGAGGATCTAGGTTATTTCACCATTGATAATATGCCGCCAGCT
    CTCTTGCCTAAGTTTTTGCAGCTGGTTGAAATTAAGGAAGATAATCCTAAGTTGGCTTTG
    GTAGTGGATATGCGTAGCCGTTCTTTCTTTTCAGAGATTCAAGCTGTTTTGGATGAGTTG
    GAAAATCAAGATGGTTTGGATTTCAAAATCCTCTTTTTGGATGCGGCTGATAAGGAATTG
    GTCGCTCGTTACAAGGAAACCAGACGGAGTCACCCACTAGCAGCAGACGGTCGTATTTTA
    GATGGAATCAAGTTGGAACGTGAACTCTTGGCACCTTTGAAAAATATGAGCCAAAATGTG
    GTGGATACGACTGAACTCACTCCACGTGAACTGCGCAAAACCCTTGCAGAGCAGTTTTCA
    GACCAAGAACAAGCCCAGTCTTTCCGTATCGAAGTCATGTCTTTCGGATTTAAGTATGGA
    ATCCCGATTGATGCGGACTTGGTCTTTGATGTCCGTTTCTTGCCAAATCCCTATTATCTA
    CCAGAACTGAGAAACCAAACGGGTGTGGATGAACCTGTTTATGATTATGTCATGAACCAT
    CCTGAGTCAGAAGACTTTTATCAACATTTATTGGCCTTGATTGAGCCGATTCTGCCAAGT
    TACCAAAAGGAAGGTAAGTCCGTTTTGACCATTGCTATGGGATGTACGGGTGGACAACAC
    CGTAGTGTGGCATTTGCTAAACGCTTGGCGCAGGACTTATCCAAGAATTGGTCTGTTAAT
    GAAGGGCATCGCGACAAAGACCGCAGAAAGGAAACGGTAAACCGTTCATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    891

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPAP_RS07835 [old locus tag: SPAP_1587 ]
  • symbol: RapZ
  • description: RNase adapter RapZ
  • length: 296
  • theoretical pI: 5.27723
  • theoretical MW: 33766.3
  • GRAVY: -0.385811

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Central intermediary metabolism Phosphorus compounds phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN (TIGR02322; HMM-score: 17.2)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Salvage of nucleosides and nucleotides uridine kinase (TIGR00235; EC 2.7.1.48; HMM-score: 14.4)
  • TheSEED: see SPAP_1587
  • ⊞PFAM:
    P-loop_NTPase (CL0023) ATP_bind_2; P-loop ATPase protein family (PF03668; HMM-score: 345.9)
    and 5 more
    AAA_22; AAA domain (PF13401; HMM-score: 15.9)
    AAA_16; AAA ATPase domain (PF13191; HMM-score: 15.6)
    AAA_18; AAA domain (PF13238; HMM-score: 14.7)
    AAA_33; AAA domain (PF13671; HMM-score: 13.9)
    PRK; Phosphoribulokinase / Uridine kinase family (PF00485; HMM-score: 13.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.076547
    • TAT(Tat/SPI): 0.004052
    • LIPO(Sec/SPII): 0.044119
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000163033 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MTKKQLHLVIVTGMSGAGKTVAIQSFEDLGYFTIDNMPPALLPKFLQLVEIKEDNPKLALVVDMRSRSFFSEIQAVLDELENQDGLDFKILFLDAADKELVARYKETRRSHPLAADGRILDGIKLERELLAPLKNMSQNVVDTTELTPRELRKTLAEQFSDQEQAQSFRIEVMSFGFKYGIPIDADLVFDVRFLPNPYYLPELRNQTGVDEPVYDYVMNHPESEDFYQHLLALIEPILPSYQKEGKSVLTIAMGCTGGQHRSVAFAKRLAQDLSKNWSVNEGHRDKDRRKETVNRS

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPAP_RS07835&oldid=41521"