From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 22-FEB-2023

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae AP200
  • locus tag: SPAP_RS13645 [old locus tag: SPAP_1282 ]
  • pan locus tag?: PNEUPAN002511000
  • symbol: SPAP_RS13645
  • pan gene symbol?: leuA
  • synonym:
  • product: alpha-isopropylmalate synthase regulatory domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPAP_RS13645 [old locus tag: SPAP_1282 ]
  • symbol: SPAP_RS13645
  • product: alpha-isopropylmalate synthase regulatory domain-containing protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1219375..1219794
  • length: 420
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_014494 (1219375..1219794) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGGTTGAAAATCCAGAAGGCTTCCACTTTGATGATTTACAACTTCAAATTCATGCAGAT
    AATGACATTGAAGCGCTCGTTAGCCTAGCCAATATGGATGGTGAGAAAGTCGAATTTAAT
    GCGACAGGGCAAGGTTCCGTTGAAGCAATCTTTAACGCTATCGATAAGTTCTTTAACCAA
    TCTGTTCGTTTGGTGTCCTACACTATCAATGTGGTAACAGATGGAATCGATGCCCAGGAT
    CGGGTTTTGGTCACTGTTGAAAACAGAGATACAGAAACCATCTTTAATGCAGCAGGGCTT
    GATTTTGATGTGTTGAAGGCTTCTGCTATTGCCTATATAAACGCTAATACCTTTGTTCAA
    AAAGAGAATGCAGGTGAGATGGGACGCAGTGTTTCTTACCACGATATGCCTAGTGTGTAA
    60
    120
    180
    240
    300
    360
    420

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPAP_RS13645 [old locus tag: SPAP_1282 ]
  • symbol: SPAP_RS13645
  • description: alpha-isopropylmalate synthase regulatory domain-containing protein
  • length: 139
  • theoretical pI: 3.97075
  • theoretical MW: 15291.8
  • GRAVY: -0.117986

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Amino acid biosynthesis Pyruvate family 2-isopropylmalate synthase (TIGR00973; EC 2.3.3.13; HMM-score: 68)
    and 3 more
    Unknown function General citramalate synthase (TIGR00977; EC 2.3.1.182; HMM-score: 20.3)
    Metabolism Amino acid biosynthesis Pyruvate family 2-isopropylmalate synthase (TIGR00970; EC 2.3.3.13; HMM-score: 19.3)
    conserved hypothetical protein (TIGR02246; HMM-score: 15.3)
  • TheSEED: see SPAP_1282
  • PFAM:
    no clan defined LeuA_dimer; LeuA allosteric (dimerisation) domain (PF08502; HMM-score: 85.6)
    and 5 more
    P-loop_NTPase (CL0023) MEDS; MEDS: MEthanogen/methylotroph, DcmR Sensory domain (PF14417; HMM-score: 15.1)
    no clan defined PTS-HPr; PTS HPr component phosphorylation site (PF00381; HMM-score: 14.4)
    IF-2; Translation-initiation factor 2 (PF11987; HMM-score: 14.2)
    TM_PBP2_N; N-terminal of TM subunit in PBP-dependent ABC transporters (PF16296; HMM-score: 13.2)
    SH3 (CL0010) Gemin7; Gem-associated protein 7 (Gemin7) (PF11095; HMM-score: 12.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9546
    • Cytoplasmic Membrane Score: 0.0085
    • Cell wall & surface Score: 0.001
    • Extracellular Score: 0.036
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003943
    • TAT(Tat/SPI): 0.000414
    • LIPO(Sec/SPII): 0.000512
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_001810584 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MVENPEGFHFDDLQLQIHADNDIEALVSLANMDGEKVEFNATGQGSVEAIFNAIDKFFNQSVRLVSYTINVVTDGIDAQDRVLVTVENRDTETIFNAAGLDFDVLKASAIAYINANTFVQKENAGEMGRSVSYHDMPSV

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPAP_RS13645&oldid=181832"