Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 25-OCT-2019
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae ATCC 49619
- locus tag: SPAT_0646 [new locus tag: EL263_RS03455 ]
- pan locus tag?: PNEUPAN001656000
- symbol: tcyB
- pan gene symbol?: glnP3b
- synonym:
- product: L-cystine transport system permease protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPAT_0646 [new locus tag: EL263_RS03455 ]
- symbol: tcyB
- product: L-cystine transport system permease protein
- replicon: chromosome
- strand: -
- coordinates: 654295..654675
- length: 381
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AP018938 (654295..654675) NCBI
- BioCyc: see EL263_RS03455
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0617 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361ATGCAGGATTCGGGAATCCAAGTACTCTTTCAAGGAAATAATCTCCTGAGAATCTTACAG
GGGTTGGGCGTTACGATTGGGATATCCATCCTGTCTGTCCTCTTATCCATGATGTTCGGA
ACAGTCATGGGAATCATCATGACCTCCCATTCTAGAATCATACGATTTTTAACACGATTG
TATCTGGAATTTATCCGTATCATGCCCCAGCTGGTGCTACTCTTCATCGTTTACTTTGGC
TTGGCTCAAAACTTTAATATCAATATCTCAGGTGAGACTTCAGCTATTATCATTTTTACC
CTCTGGGGAACAGCTGAAATGGGAGACTTGGTACGTGGAGCTATCACTTCTCTCCCTAAA
CATCAGTTTGAAAGTGGATAG60
120
180
240
300
360
381
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPAT_0646 [new locus tag: EL263_RS03455 ]
- symbol: TcyB
- description: L-cystine transport system permease protein
- length: 126
- theoretical pI: 9.14776
- theoretical MW: 13994.6
- GRAVY: 0.783333
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Amino acids, peptides and amines amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family (TIGR01726; HMM-score: 74.2)and 3 moreectoine/hydroxyectoine ABC transporter, permease protein EhuC (TIGR03004; HMM-score: 52.7)ectoine/hydroxyectoine ABC transporter, permease protein EhuD (TIGR03003; HMM-score: 39.4)Transport and binding proteins Anions phosphonate ABC transporter, permease protein PhnE (TIGR01097; HMM-score: 27.4)
- TheSEED: data available for D39, TIGR4
- PFAM:
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.01
- Cytoplasmic Membrane Score: 9.99
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 2
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001964
- TAT(Tat/SPI): 0.001748
- LIPO(Sec/SPII): 0.002637
- predicted transmembrane helices (TMHMM): 2
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: BBG38703 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MQDSGIQVLFQGNNLLRILQGLGVTIGISILSVLLSMMFGTVMGIIMTSHSRIIRFLTRLYLEFIRIMPQLVLLFIVYFGLAQNFNINISGETSAIIIFTLWGTAEMGDLVRGAITSLPKHQFESG
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0617 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.