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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 25-OCT-2019

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae ATCC 49619
  • locus tag: SPAT_1322 [new locus tag: EL263_RS06940 ]
  • pan locus tag?: PNEUPAN002704000
  • symbol: ydcP_1
  • pan gene symbol?: ydcP_1
  • synonym:
  • product: putative protease YdcP

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPAT_1322 [new locus tag: EL263_RS06940 ]
  • symbol: ydcP_1
  • product: putative protease YdcP
  • replicon: chromosome
  • strand: -
  • coordinates: 1316028..1316753
  • length: 726
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: AP018938 (1316028..1316753) NCBI
  • BioCyc: see EL263_RS06940
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGCGTGATGCCAACCGTGGTGGATGTTCTCAGTCATGCCGTTGGAAATACGACCTTTAC
    GATATGCCATTTGGGAAAGAACGTAAGAGTTTGCAGGGTGAGATTCCAGAAGAATTTTCA
    ATGTCAGCCGTTGACATGTCTATGATTGACCACATTCCAGATATGATTGAAAATGGTGTG
    GACAGTCTAAAAATCGAAGGACGTATGAAGTCTATTCACTACGTATCAACAGTAACCAAC
    TGCTACAAGGCGGCTGTGGATGCCTATCTTGAAAGTTCTGAAAAGTTTGAAGCTATCAAA
    CAAGACTTGGTGGACGAGATGTGGAAGGTTGCCCAACGTGAACTGGTTACAGGATTTTAC
    TATGGTACACCATCTGAAAATGAGCAGTTGTTTGGTGCTCGTCGTAAAATTCCTGAGTAC
    AAGTTTGTCGCTGAAGTGGTTTCTTATGATGATGCGACACAAACAGCAACCATTCGTCAA
    CGGAACGTCATTAACGAAGGGGACCAAGTTGAGTTTTATGGTCCAGGTTTCCGTCATTTT
    GAAACCTATATTGAAGATTTGCATGATGCCAAAGGAAATAAAATCGACCGCGCTCCAAAT
    CCAATGGAACTATTGACTATTAAAGTCCCACAACCTGTTCAAGCTGGAGACATGGTTCGA
    GCTCTTAAAGAGGGGCTTATCAATCTTTATAAGGAAGATGGAACCAGCGTCACAGTTCGT
    GCTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    726

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPAT_1322 [new locus tag: EL263_RS06940 ]
  • symbol: YdcP_1
  • description: putative protease YdcP
  • length: 241
  • theoretical pI: 4.77031
  • theoretical MW: 27492.9
  • GRAVY: -0.559751

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Amino acid biosynthesis Pyruvate family 3-isopropylmalate dehydrogenase (TIGR00169; EC 1.1.1.85; HMM-score: 15.4)
    Metabolism Energy metabolism Other lactoylglutathione lyase (TIGR00068; EC 4.4.1.5; HMM-score: 14)
    Metabolism Central intermediary metabolism Amino sugars lactoylglutathione lyase (TIGR00068; EC 4.4.1.5; HMM-score: 14)
  • TheSEED:
  • PFAM:
    no clan defined Peptidase_U32; Peptidase family U32 (PF01136; HMM-score: 113.8)
    and 2 more
    Peptidase_U32_C; Peptidase family U32 C-terminal domain (PF16325; HMM-score: 83.1)
    LPD3; Large polyvalent protein-associated domain 3 (PF18798; HMM-score: 12.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8485
    • Cytoplasmic Membrane Score: 0.0714
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.08
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004599
    • TAT(Tat/SPI): 0.000268
    • LIPO(Sec/SPII): 0.000925
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: BBG39371 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MRDANRGGCSQSCRWKYDLYDMPFGKERKSLQGEIPEEFSMSAVDMSMIDHIPDMIENGVDSLKIEGRMKSIHYVSTVTNCYKAAVDAYLESSEKFEAIKQDLVDEMWKVAQRELVTGFYYGTPSENEQLFGARRKIPEYKFVAEVVSYDDATQTATIRQRNVINEGDQVEFYGPGFRHFETYIEDLHDAKGNKIDRAPNPMELLTIKVPQPVQAGDMVRALKEGLINLYKEDGTSVTVRA

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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