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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 25-OCT-2019

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae ATCC 49619
  • locus tag: SPAT_1326 [new locus tag: EL263_RS06970 ]
  • pan locus tag?: PNEUPAN002708000
  • symbol: yhdJ
  • pan gene symbol?: yhdJ
  • synonym:
  • product: DNA adenine methyltransferase YhdJ

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPAT_1326 [new locus tag: EL263_RS06970 ]
  • symbol: yhdJ
  • product: DNA adenine methyltransferase YhdJ
  • replicon: chromosome
  • strand: +
  • coordinates: 1319791..1320981
  • length: 1191
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGACAGTATTAAAAGGAGATAACTTAGAAATATTAAAAACTATTGAATCCTCAAGTATT
    GATTTAATCTATATGGACCCTCCTTTCTTTACACAGAAAACCCAAAAATTATCTAATAAC
    AAAAATGTTATGTATTCATTCGAAGATACGTGGACTTCGATTGAGGATTACAAAGAATTT
    TTGTCTATAAGATTAGAAGAATGCAAAAGAGTGCTAAAAAATAGTGGCAGTATTTTCGTT
    CATTGTGATAAAATTGCAAATCATCATATTAGATTAATTTTAGATAATATCTTTGGAGCA
    GATATGTTTCAAAGCGAAATTATATGGAACTATAAACGGTGGTCTAATTCAAAAAAGGGA
    TTATTGAACAATCATCAAAACATTTACTTTTATTCAAAGTCAAAAGATTTTAAATTTAAT
    ACAATTTTTACAGAGTATTCTTCTACTACAAATATCGACCAAATACTAGTAGAACGAAAA
    CGAAATGGAAACTCTAAAACTATATATAAAGTTGATAATAATGGTGACTATATTCTAGCA
    AAAGAGAAAAATGGAGTTCCCCTTTCAGATGTTTGGAATATACCATTTCTTAATCCAAAA
    GCTAAAGAAAGAGTAGGTTATCCTACACAAAAACCTATTCTGTTATTAGAACAAATTATA
    AAGATTGCTACTGATAAAAATGATATAGTTTTAGACCCGTTCTGTGGAAGTGGAACTACT
    TTAGTAGCCTCCAAGATTTTGAATAGAAATTATATGGGGATTGATTTATCTGAGGAAGCT
    ATCAATATAACTCAGCAACGTCTGGAAAATGTTATAAAAACAAGTTCAAATTTATTGAAT
    AAAGGAATCGAAGCATATAGAACCAAAACTGAGGAAGAGGAAAACATTCTTAAATTATTA
    CAGGCAAAAATTGTTCAAAGAAATAAAGGAATTGATGGTTTTTTACCTAAACATTTTCAA
    AAAAAACCGATACCTATAAAAATTCAAAAAAATAATGAATGTCTGAATGAGAGTATCTCT
    TTATTACAGAATGCTATAAACTCCAAAAAACTTGATTTTGGAGTAGTTATAAAAACTCAT
    TCAGATAATTTATTATTTGATTTTGATACGATTCCTGAAAATATAATAGTAGTTGACCAT
    TTTGAACTTACAATCGAAAAATGGTTAAGTAAAAGTCAACAGTTACTATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1191

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPAT_1326 [new locus tag: EL263_RS06970 ]
  • symbol: YhdJ
  • description: DNA adenine methyltransferase YhdJ
  • length: 396
  • theoretical pI: 8.75173
  • theoretical MW: 45781.2
  • GRAVY: -0.415404

⊟Function[edit | edit source]

  • TIGRFAM:
    Hypothetical proteins Conserved putative methyltransferase, TIGR01177 family (TIGR01177; HMM-score: 23.1)
    Genetic information processing Protein fate Protein modification and repair protein-(glutamine-N5) methyltransferase, release factor-specific (TIGR03534; EC 2.1.1.-; HMM-score: 21.9)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Menaquinone and ubiquinone ubiquinone/menaquinone biosynthesis methyltransferase (TIGR01934; EC 2.1.1.-; HMM-score: 19.3)
    and 2 more
    Genetic information processing Protein synthesis tRNA and rRNA base modification 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR00479; EC 2.1.1.-; HMM-score: 13.6)
    Genetic information processing Protein synthesis tRNA and rRNA base modification 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD (TIGR00095; EC 2.1.1.171; HMM-score: 13.5)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    NADP_Rossmann (CL0063) N6_N4_Mtase; DNA methylase (PF01555; HMM-score: 175.6)
    and 11 more
    MethyltransfD12; D12 class N6 adenine-specific DNA methyltransferase (PF02086; HMM-score: 22)
    Cons_hypoth95; Conserved hypothetical protein 95 (PF03602; HMM-score: 21.6)
    Methyltransf_31; Methyltransferase domain (PF13847; HMM-score: 21.2)
    Methyltransf_25; Methyltransferase domain (PF13649; HMM-score: 21.1)
    Methyltransf_11; Methyltransferase domain (PF08241; HMM-score: 18.7)
    UPF0020; Putative RNA methylase family UPF0020 (PF01170; HMM-score: 18.1)
    Methyltransf_12; Methyltransferase domain (PF08242; HMM-score: 17.3)
    PrmA; Ribosomal protein L11 methyltransferase (PrmA) (PF06325; HMM-score: 16.4)
    Methyltransf_15; RNA cap guanine-N2 methyltransferase (PF09445; HMM-score: 15.1)
    TPMT; Thiopurine S-methyltransferase (TPMT) (PF05724; HMM-score: 14.3)
    MTS; Methyltransferase small domain (PF05175; HMM-score: 13.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9509
    • Cytoplasmic Membrane Score: 0.0103
    • Cell wall & surface Score: 0.0011
    • Extracellular Score: 0.0377
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002408
    • TAT(Tat/SPI): 0.000095
    • LIPO(Sec/SPII): 0.000832
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: BBG39375 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MTVLKGDNLEILKTIESSSIDLIYMDPPFFTQKTQKLSNNKNVMYSFEDTWTSIEDYKEFLSIRLEECKRVLKNSGSIFVHCDKIANHHIRLILDNIFGADMFQSEIIWNYKRWSNSKKGLLNNHQNIYFYSKSKDFKFNTIFTEYSSTTNIDQILVERKRNGNSKTIYKVDNNGDYILAKEKNGVPLSDVWNIPFLNPKAKERVGYPTQKPILLLEQIIKIATDKNDIVLDPFCGSGTTLVASKILNRNYMGIDLSEEAINITQQRLENVIKTSSNLLNKGIEAYRTKTEEEENILKLLQAKIVQRNKGIDGFLPKHFQKKPIPIKIQKNNECLNESISLLQNAINSKKLDFGVVIKTHSDNLLFDFDTIPENIIVVDHFELTIEKWLSKSQQLL

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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