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TIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae CGSP14
  • locus tag: SPCG_0026
  • pan locus tag?:
  • symbol: SPCG_0026
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPCG_0026
  • symbol: SPCG_0026
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 28203..28754
  • length: 552
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP001033 (28203..28754) NCBI
  • BioCyc:
  • MicrobesOnline: 5759354 MicrobesOnline
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    TTGGGGTGTTTTATTATGAAATTGAGTTATGAAGATAAAGTTCAGATCTATGAACTAAGA
    AAGCAAGGACAAAGCTTCAAACAGCTTTCAAAAAGATTTGGTGTGGATGTTTCTGGTCTA
    AAGTACATGGTGAAATTAATTGACCGTTATGGCATAGAAATCGTTAAAAAAGGGAAGAAT
    CGTCACTATTCTTCTAAATTGAAACAAGAAATGATGGATAAAGCCTTACTGGAAGGTTGT
    TCACAAAGAAGTATTAGTCTTGATTATGCCCTCCCAAACCAAGGAATGCTTTCATTTTGG
    CCGGCACAATACAAGAAAAACGGGTATACTATTGTTGAGAAAACAAGAGGGAGACCAGCT
    AAAATGGGACGTAAACGGAAGAAGACTTGGGAAGAAATGACAGAACTAGAACGACTCCAG
    GAGGAGAATGAACGCTTACGGACTGAGGTGGCCTACCTAAAAAAGTTAAAAGAGTTAGAG
    GAAAGGGACGAAGCCCTAGAGCGAGAAAGGCAGAGACAGTTAGAGAAATGGTTTCAGGAG
    GATTTCGACTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    552

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPCG_0026
  • symbol: SPCG_0026
  • description: hypothetical protein
  • length: 183
  • theoretical pI: 9.98159
  • theoretical MW: 22009.3
  • GRAVY: -1.00546

⊟Function[edit | edit source]

  • TIGRFAM:
    radical SAM/Cys-rich domain protein (TIGR04167; HMM-score: 10.8)
  • TheSEED  :
    • Mobile element protein
  • PFAM:
    HTH (CL0123) HTH_38; Helix-turn-helix domain (PF13936; HMM-score: 26.8)
    and 9 more
    HTH_7; Helix-turn-helix domain of resolvase (PF02796; HMM-score: 14.9)
    no clan defined YabA; Initiation control protein YabA (PF06156; HMM-score: 12.9)
    DUF3641; Protein of unknown function (DUF3641) (PF12345; HMM-score: 12.4)
    P-loop_NTPase (CL0023) AAA_23; AAA domain (PF13476; HMM-score: 12.3)
    HTH (CL0123) Bot1p; Eukaryotic mitochondrial regulator protein (PF12298; HMM-score: 11.9)
    no clan defined zf-C4H2; Zinc finger-containing protein (PF10146; HMM-score: 11.8)
    EDD (CL0245) DegV; Uncharacterised protein, DegV family COG1307 (PF02645; HMM-score: 10.9)
    no clan defined QLQ; QLQ (PF08880; HMM-score: 10.9)
    bZIP (CL0018) bZIP_2; Basic region leucine zipper (PF07716; HMM-score: 6.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9916
    • Cytoplasmic Membrane Score: 0.0007
    • Cell wall & surface Score: 0.0022
    • Extracellular Score: 0.0055
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002792
    • TAT(Tat/SPI): 0.000309
    • LIPO(Sec/SPII): 0.00075
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACB89278 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MGCFIMKLSYEDKVQIYELRKQGQSFKQLSKRFGVDVSGLKYMVKLIDRYGIEIVKKGKNRHYSSKLKQEMMDKALLEGCSQRSISLDYALPNQGMLSFWPAQYKKNGYTIVEKTRGRPAKMGRKRKKTWEEMTELERLQEENERLRTEVAYLKKLKELEERDEALERERQRQLEKWFQEDFD

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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