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NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae CGSP14
  • locus tag: SPCG_0131 [new locus tag: SPCG_RS00710 ]
  • pan locus tag?: PNEUPAN000804000
  • symbol: rimI
  • pan gene symbol?: rimI
  • synonym:
  • product: ribosomal-protein-alanine acetyltransferase, putative

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPCG_0131 [new locus tag: SPCG_RS00710 ]
  • symbol: rimI
  • product: ribosomal-protein-alanine acetyltransferase, putative
  • replicon: chromosome
  • strand: +
  • coordinates: 130407..130844
  • length: 438
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGATAGAAATCAAACGAATCCAACAGCGACCTGACTTGGCTCAAGCCATCTACGCTGTT
    ATGATAGCTGTTTACCCAATCAACCCTTGGACGCTGGAACAAATCCAAGCAGATCTGTCC
    CAAGACCAGACTTGGTATGCATTGGCTTATGATGGGGCAGAAGTGATTGGATTTCTAGCT
    GTGCAGGAGAATCTTTTTGAAGCAGAAGTCCTGCAAATCGCTGTCAAAGGAGCTTATCAG
    GGTCAGGGAATTGCGTCAGCCTTGTTTGCTCAATTGCCGACAGACAAGGAAATTTTCCTC
    GAAGTCAGACAGTCAAATCAACGAGCGCAAGCATTTTACAAGAAAGAAAAGATGGCAGTT
    ATCGCTGAGCGAAAGGCCTACTACCATGACCCAGTCGAGGACGCCATTATCATGAAGAGA
    GAAATAGATGAAGGATAG
    60
    120
    180
    240
    300
    360
    420
    438

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPCG_0131 [new locus tag: SPCG_RS00710 ]
  • symbol: RimI
  • description: ribosomal-protein-alanine acetyltransferase, putative
  • length: 145
  • theoretical pI: 4.43859
  • theoretical MW: 16525.8
  • GRAVY: -0.153793

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal-protein-alanine acetyltransferase (TIGR01575; EC 2.3.1.128; HMM-score: 143)
    and 1 more
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Glutathione and analogs mycothiol synthase (TIGR03448; EC 2.3.1.189; HMM-score: 18.8)
  • TheSEED  :
    • Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-)
    Protein Metabolism Protein biosynthesis Ribosome biogenesis bacterial  Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-)
    and 1 more
    RNA Metabolism RNA processing and modification YrdC-YciO-Sua5 and associated protein families  Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-)
  • PFAM:
    Acetyltrans (CL0257) Acetyltransf_1; Acetyltransferase (GNAT) family (PF00583; HMM-score: 39.6)
    Acetyltransf_7; Acetyltransferase (GNAT) domain (PF13508; HMM-score: 38.8)
    and 3 more
    Acetyltransf_10; Acetyltransferase (GNAT) domain (PF13673; HMM-score: 31.5)
    Acetyltransf_CG; GCN5-related N-acetyl-transferase (PF14542; HMM-score: 13.7)
    FR47; FR47-like protein (PF08445; HMM-score: 12.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9993
    • Cytoplasmic Membrane Score: 0
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0007
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.1924
    • TAT(Tat/SPI): 0.005336
    • LIPO(Sec/SPII): 0.001683
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACB89383 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MIEIKRIQQRPDLAQAIYAVMIAVYPINPWTLEQIQADLSQDQTWYALAYDGAEVIGFLAVQENLFEAEVLQIAVKGAYQGQGIASALFAQLPTDKEIFLEVRQSNQRAQAFYKKEKMAVIAERKAYYHDPVEDAIIMKREIDEG

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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