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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 30-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae CGSP14
- locus tag: SPCG_0636 [new locus tag: SPCG_RS03335 ]
- pan locus tag?: PNEUPAN001595000
- symbol: SPCG_0636
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPCG_0636 [new locus tag: SPCG_RS03335 ]
- symbol: SPCG_0636
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 641540..641737
- length: 198
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP001033 (641540..641737) NCBI
- BioCyc: see SPCG_RS03335
- MicrobesOnline: 5759964 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_0591 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181GTGGGTATCTTGTCGATTATTCTTGGTTTGTTATTTCCAATTGTAGGCCTGATTTTGGGT
ATCATAGGATTGGTCTTGGCTATTTCATACCAAAAAGAGTCACAATTAGACTATAAAATA
GAAAAGATTCTTAATATCTTAGGAATTGTGATTTCTGTAGTTAACTGGATTGTAGCAATC
GCCTTAATTTTTCGGTAA60
120
180
198
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPCG_0636 [new locus tag: SPCG_RS03335 ]
- symbol: SPCG_0636
- description: hypothetical protein
- length: 65
- theoretical pI: 9.09931
- theoretical MW: 7118.8
- GRAVY: 1.60462
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- FIG01114191: hypothetical protein
- PFAM: no clan defined MpPF26; M penetrans paralogue family 26 (PF07666; HMM-score: 39.1)and 10 moreEhaL; Energy-converting hydrogenase subunit EhaL (PF09877; HMM-score: 15.8)DHHC; DHHC palmitoyltransferase (PF01529; HMM-score: 12.9)DUF3671; Protein of unknown function (PF12420; HMM-score: 12.9)Tetraspannin (CL0347) DUF4064; Protein of unknown function (DUF4064) (PF13273; HMM-score: 12.2)no clan defined TMEM43; Transmembrane protein 43 (PF07787; HMM-score: 10.3)Tetraspannin (CL0347) Tetraspanin; Tetraspanin family (PF00335; HMM-score: 9.2)no clan defined DUF4190; Domain of unknown function (DUF4190) (PF13828; HMM-score: 9)Holin-II (CL0563) Phage_holin_2_3; Bacteriophage holin family HP1 (PF16080; HMM-score: 7.3)no clan defined COPI_assoc; COPI associated protein (PF08507; HMM-score: 6.5)DUF2207; Predicted membrane protein (DUF2207) (PF09972; HMM-score: 5.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.32
- Cytoplasmic Membrane Score: 9.55
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helices: 2
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0001
- Cytoplasmic Membrane Score: 0.7453
- Cell wall & surface Score: 0.0002
- Extracellular Score: 0.2545
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.008581
- TAT(Tat/SPI): 0.000314
- LIPO(Sec/SPII): 0.027411
- predicted transmembrane helices (TMHMM): 2
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: ACB89888 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MGILSIILGLLFPIVGLILGIIGLVLAISYQKESQLDYKIEKILNILGIVISVVNWIVAIALIFR
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0591 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]