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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 30-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae CGSP14
- locus tag: SPCG_1069 [new locus tag: SPCG_RS05540 ]
- pan locus tag?: PNEUPAN002473000
- symbol: SPCG_1069
- pan gene symbol?: niaX
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPCG_1069 [new locus tag: SPCG_RS05540 ]
- symbol: SPCG_1069
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1041110..1041691
- length: 582
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP001033 (1041110..1041691) NCBI
- BioCyc: see SPCG_RS05540
- MicrobesOnline: 5760402 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_1091 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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481
541TTGTCTGGTTTATTGTACCATACTAGTGTATATGCAGTTAAAAAGGAGATTCTTGTGAAT
ACACGGAAAAAGACACAATTTATGACAATGACAGCCCTTTTAACGGCTATTGCGATTTTG
ATTCCAATTGTTATGCCTTTCAAGATTGTCATTCCACCTGCTTCCTATACTTTGGGGAGC
CACATCGCTATTTTTATAGCCATGTTCTTGTCGCCCTTGATGGCAGTTTTTGTCATCCTA
GCCTCTAGTTTTGGATTTTTGATGGCTGGCTATCCCATGGTTATCGTTTTTCGGGCTTTT
TCCCATATATCTTTTGGTGCTTTAGGAGCTCTTTACCTACAAAAATTCCCCGATACCCTA
GATAAACCAAAATCTTCCTGGGTTTTCAATTTTGTTTTGGCTGTTGTTCATGCCCTTGCT
GAAGTAATAGCCTGTGTCCTTTTTTACGCAACTTCGGGTACCAATGTAGAAAATATGTTT
TATGTTCTATTTGTAATAGTTGGATTTGGCACAATTATCCATAGTATGGTAGACTATACA
TTAGCACTAGCTGTCTATAAAGTGGTTCGAAAACGCCGTTAA60
120
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420
480
540
582
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPCG_1069 [new locus tag: SPCG_RS05540 ]
- symbol: SPCG_1069
- description: hypothetical protein
- length: 193
- theoretical pI: 10.1996
- theoretical MW: 21420.8
- GRAVY: 0.988083
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- Substrate-specific component NiaX of predicted niacin ECF transporter
Cofactors, Vitamins, Prosthetic Groups, Pigments NAD and NADP NAD and NADP cofactor biosynthesis global Substrate-specific component NiaX of predicted niacin ECF transporterand 1 more - PFAM: Gx_transp (CL0315) ECF-ribofla_trS; ECF-type riboflavin transporter, S component (PF07155; HMM-score: 24.9)and 1 moreECF_trnsprt; ECF transporter, substrate-specific component (PF12822; HMM-score: 16.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 5
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0002
- Cytoplasmic Membrane Score: 0.9963
- Cell wall & surface Score: 0
- Extracellular Score: 0.0035
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.009973
- TAT(Tat/SPI): 0.000399
- LIPO(Sec/SPII): 0.008937
- predicted transmembrane helices (TMHMM): 5
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: ACB90321 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MSGLLYHTSVYAVKKEILVNTRKKTQFMTMTALLTAIAILIPIVMPFKIVIPPASYTLGSHIAIFIAMFLSPLMAVFVILASSFGFLMAGYPMVIVFRAFSHISFGALGALYLQKFPDTLDKPKSSWVFNFVLAVVHALAEVIACVLFYATSGTNVENMFYVLFVIVGFGTIIHSMVDYTLALAVYKVVRKRR
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: NiaR* (repression) regulon
NiaR* (TF) important in NAD biosynthesis; RegPrecise
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1091 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]