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serotype 1

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae CGSP14
  • locus tag: SPCG_1234 [new locus tag: SPCG_RS06390 ]
  • pan locus tag?: PNEUPAN002556000
  • symbol: SPCG_1234
  • pan gene symbol?: tarJ
  • synonym:
  • product: alcohol dehydrogenase, zinc-containing

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPCG_1234 [new locus tag: SPCG_RS06390 ]
  • symbol: SPCG_1234
  • product: alcohol dehydrogenase, zinc-containing
  • replicon: chromosome
  • strand: -
  • coordinates: 1217675..1218715
  • length: 1041
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    TTGAGAAAGACTAGTAAAATGATTAATCAAATTTATCAACTAACTAAGCCTAAGTTTATC
    AATGTCAAATATCAGGAAGAGGCTATTGACCAAGAAAATCATATCCTTATCCGTCCCAAC
    TACATGGCTGTCTGTCATGCGGATCAGCGTTACTATCAGGGAAAACGTGATCCCAAGATT
    TTGAATAAAAAGCTTCCAATGGCAATGATTCACGAGTCATGTGGAACCGTCATTTCTGAC
    CCGACCGGAACCTACGAGGTTGGTCAAAAAGTTGTCATGATTCCCAATCAGTCTCCTATG
    CAGAGTGATGAAGAATTCTATGAAAACTACATGACAGGGACCCATTTCTTGTCTAGTGGA
    TTTGATGGCTTTATGAGAGAGTTTGTTTCTCTCCCTAAAGATCGTGTGGTGGCTTATGAT
    GCTATTGAAGATACGGTTGCAGCCATTACAGAGTTTGTCAGTGTGGGCATGCACGCTATG
    AATCGTCTATTGACTCTTGCTCATAGCAAGCGGGAGCGGATCGCCGTTATTGGAGATGGA
    AGTTTAGCTTTTGTGGTTGCCAATATTATCAACTATACTTTGCCAGAAGCAGAGATTGTG
    GTTATTGGTCGTCATTGGGAAAAGTTGGAACTCTTCTCATTTGCCAAAGAATGCTATATT
    ACGGATAATATTCCTGAAGATTTGGCCTTTGACCATGCTTTTGAATGTTGTGGTGGTGAT
    GGTACTGGACCAGCTATTAATGACTTGATTCGCTACATTCGTCCTCAGGGAACGATTCTC
    ATGATGGGAGTTAGCGAATATAAAGTCAATCTCAATACTCGCGATGCCTTAGAAAAGGGC
    TTGCTCTTGGTTGGGTCATCTCGTTCTGGTCGCATTGATTTTGAAAATGCTATCCAAATG
    ATGGAAGTCAAGAAATTTGCCAATCGTCTTAAAAATATCCTTTATCTAGAAGAACCTGTA
    AGAGAAATTAAAGATATTCATCGTGTCTTTGCAACCGATTTAAACACAGCCTTTAAAACA
    GTGTTTAAGTGGGAAGTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1041

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPCG_1234 [new locus tag: SPCG_RS06390 ]
  • symbol: SPCG_1234
  • description: alcohol dehydrogenase, zinc-containing
  • length: 346
  • theoretical pI: 6.25035
  • theoretical MW: 39502.3
  • GRAVY: -0.207514

⊟Function[edit | edit source]

  • TIGRFAM:
    6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase (TIGR03201; EC 1.1.1.-; HMM-score: 18.7)
  • TheSEED  :
    • Xylitol dehydrogenase
  • PFAM:
    GroES (CL0296) ADH_N; Alcohol dehydrogenase GroES-like domain (PF08240; HMM-score: 43.2)
    and 3 more
    NADP_Rossmann (CL0063) ADH_zinc_N; Zinc-binding dehydrogenase (PF00107; HMM-score: 29.3)
    Glu_dehyd_C; Glucose dehydrogenase C-terminus (PF16912; HMM-score: 26)
    HTH (CL0123) NUMOD1; NUMOD1 domain (PF07453; HMM-score: 13.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.014191
    • TAT(Tat/SPI): 0.000388
    • LIPO(Sec/SPII): 0.001223
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MRKTSKMINQIYQLTKPKFINVKYQEEAIDQENHILIRPNYMAVCHADQRYYQGKRDPKILNKKLPMAMIHESCGTVISDPTGTYEVGQKVVMIPNQSPMQSDEEFYENYMTGTHFLSSGFDGFMREFVSLPKDRVVAYDAIEDTVAAITEFVSVGMHAMNRLLTLAHSKRERIAVIGDGSLAFVVANIINYTLPEAEIVVIGRHWEKLELFSFAKECYITDNIPEDLAFDHAFECCGGDGTGPAINDLIRYIRPQGTILMMGVSEYKVNLNTRDALEKGLLLVGSSRSGRIDFENAIQMMEVKKFANRLKNILYLEEPVREIKDIHRVFATDLNTAFKTVFKWEV

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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