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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae CGSP14
  • locus tag: SPCG_1975 [new locus tag: SPCG_RS10420 ]
  • pan locus tag?: PNEUPAN003644000
  • symbol: SPCG_1975
  • pan gene symbol?: —
  • synonym:
  • product: putative IS1202 transposase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPCG_1975 [new locus tag: SPCG_RS10420 ]
  • symbol: SPCG_1975
  • product: putative IS1202 transposase
  • replicon: chromosome
  • strand: +
  • coordinates: 1959245..1960516
  • length: 1272
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGAAAAGGATCCAACTGAATATGAATGAAACGAAAAAATATCTTGTGATAAAAGCTATA
    GCCCAAGGAAAGAAAACAAAGAAACGGGCCTGTGTCGAACTCAATCTTTCTGAAAGACAA
    ATCAATCGTCTGTTACTAGCCTATCAACAGAAAGGAAAAGAAGCCTTCAGACACGGACAC
    GGAAACAGAAATCGAAAACCAAAACATGCAATCCCTGATGAAATCAAAGAACGTGTCCTA
    AAGAAATACATCTCCTATGAAACATATAAACCAAATGTCCTTCATTTCTGTGAATTACTA
    GCTGAAGAAGAGGGAATTAAGCTCTCTGATACAACTGTTAGAAAAATACTCTATAAGAAA
    AACATCCTTTCTCCTAAGTCTCACAGAAAGACAAAGAAGAGAGTAAGAAAACAAGCTAAA
    CTGAACCTGAATCAACCCCTAGACAATCCAATCTTACCGACGGCTAAAGACTTCCTGGAA
    GACCCTAAAAAGGTACATCCTAGTAGACCCAGAAAGAAATTTGCTGGAGAACTCATTCAA
    ATGGATGCCAGCCCTCATGCCTGGTTTGGACCAGAAACCACCAACTTACACTTAGCCATT
    GATGATGCTTCTGGCAATATCCTAGGCGCTTATTTTGACAAACAAGAGACCTTGAATGCC
    TACTACCATGTCCTCGAACAAATCTTAGCCAATCACGGCATTCCCCTTCAAATGAAAACT
    GATAAGAGAACGGTCTTTACCTATCAGGCCTCCAACTCTAAGAAAATGGAGGACGACACC
    TATACACAATTTGGATACGCCTGTCACCAACTAGGGATTCTCCTTGAGACCACCTCTATC
    CCTCAAGCTAAAGGGAGAGTCGAAAGACTCAATCAGACACTACAATCACGCCTGCCTATC
    GAACTGGAACGAAACAATATTCATACATTGGAAGATGCCAATACTTTCCTTCTTTCCTAC
    ATCCAAACCTTTAATGAACAGTTTGGAAACAAGACAAAACTCTCTGTTTTTGAGGAGGCT
    CCTAACCCCTCTGAACGGAATCTCATTCTAGCTAGACTGGCGGAGAGAGTCGTCGATAGT
    GGACACCATATCCGATTCCAAAATCGTTACTATATGCCTGTTGAACAAGGAAAAGAAGTC
    TATTTCATCAGAAAGACGAAAGCATTAGTTCTAAAAGCATTTGATGGTGACATCTACCTC
    AATATCGCTGACAAAATCTATCACACAAAGGAGCTACTAGATCATGAACTCTATTCGAAA
    AACTTTGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1272

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPCG_1975 [new locus tag: SPCG_RS10420 ]
  • symbol: SPCG_1975
  • description: putative IS1202 transposase
  • length: 423
  • theoretical pI: 10.0945
  • theoretical MW: 49229.3
  • GRAVY: -0.704728

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Mobile element protein
  • PFAM:
    HTH (CL0123) HTH_29; Winged helix-turn helix (PF13551; HMM-score: 36.3)
    and 6 more
    RNase_H (CL0219) rve; Integrase core domain (PF00665; HMM-score: 25.6)
    HTH (CL0123) HTH_23; Homeodomain-like domain (PF13384; HMM-score: 25.6)
    HTH_28; Helix-turn-helix domain (PF13518; HMM-score: 22.2)
    HTH_32; Homeodomain-like domain (PF13565; HMM-score: 22.1)
    RNase_H (CL0219) rve_3; Integrase core domain (PF13683; HMM-score: 14.5)
    no clan defined DUF6312; Family of unknown function (DUF6312) (PF19831; HMM-score: 8.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9496
    • Cytoplasmic Membrane Score: 0.0029
    • Cell wall & surface Score: 0.0084
    • Extracellular Score: 0.0391
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.012827
    • TAT(Tat/SPI): 0.001411
    • LIPO(Sec/SPII): 0.00435
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACB91227 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKRIQLNMNETKKYLVIKAIAQGKKTKKRACVELNLSERQINRLLLAYQQKGKEAFRHGHGNRNRKPKHAIPDEIKERVLKKYISYETYKPNVLHFCELLAEEEGIKLSDTTVRKILYKKNILSPKSHRKTKKRVRKQAKLNLNQPLDNPILPTAKDFLEDPKKVHPSRPRKKFAGELIQMDASPHAWFGPETTNLHLAIDDASGNILGAYFDKQETLNAYYHVLEQILANHGIPLQMKTDKRTVFTYQASNSKKMEDDTYTQFGYACHQLGILLETTSIPQAKGRVERLNQTLQSRLPIELERNNIHTLEDANTFLLSYIQTFNEQFGNKTKLSVFEEAPNPSERNLILARLAERVVDSGHHIRFQNRYYMPVEQGKEVYFIRKTKALVLKAFDGDIYLNIADKIYHTKELLDHELYSKNFE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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