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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 30-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae CGSP14
- locus tag: SPCG_2040 [new locus tag: SPCG_RS10815 ]
- pan locus tag?: PNEUPAN003748000
- symbol: SPCG_2040
- pan gene symbol?: patB
- synonym:
- product: ABC transporter, ATP-binding/permease protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPCG_2040 [new locus tag: SPCG_RS10815 ]
- symbol: SPCG_2040
- product: ABC transporter, ATP-binding/permease protein
- replicon: chromosome
- strand: -
- coordinates: 2027270..2029081
- length: 1812
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP001033 (2027270..2029081) NCBI
- BioCyc: see SPCG_RS10815
- MicrobesOnline: 5761429 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_1900 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1801TTGGCAGTAGCTAACTGCGCTAAATATAATATAAGGAGGAGTAAAATGAAGACAGTTCAA
TTTTTTTGGCATTATTTTAAGGTCTACAAGTTCTCATTTGTAGTTGTCATCCTGATGATT
GTTCTGGCGACTTTTGCCCAAGCCCTCTTTCCAGTCTTTTCTGGACAAGCGGTGACGCAG
CTAGCCAATTTAGTTCAAGCTTATCAAAATGGCAATCCAGAACTTGTATGGCAAAGCCTA
TCAGGAATCATGGTCAATCTTGGCCTGCTGGTTTTGGTTCTATTTATCTCTAGTGTAATA
TACATGTGTCTCATGACGCGCGTGATTGCAGAATCGACCAACGAGATGCGCAAAGGCCTC
TTTGGTAAGCTTGCTCAGTTGACGGTTTCTTTCTTTGACCGTCGACAAGATGGCGATATC
CTGTCTCATTTTACCAGTGATTTGGATAATATCCTCCAAGCCTTTAACGAAAGCTTGATT
CAGGTCATGAGCAATATTGTTTTATACATTGGTCTGATTCTTGTCATGTTTTCGAGAAAT
GTGACGCTGGCTCTCATCACCATTGCCAGCACCCCATTGGCTTTCCTTATGCTGATTTTC
ATCGTGAAAATGGCACGCAAATACACCAACCTCCAGCAGAAAGAGGTAGGGAAGCTCAAC
GCCTATATGGATGAGAGCATCTCAGGCCAAAAAGCCGTGATTGTGCAAGGAATTCAAGAG
GATATGATGGCAGGATTTCTTGAACAAAATGAGCGCGTGCGCAAGGCAACCTTTAAAGGA
AGAATGTTCTCAGGAATTCTTTTCCCTGTCATGAATGGGATGAGCCTGATTAATACAGCC
ATCGTCATCTTTGCTGGTTCGGCTGTACTTTTGAATGATAAGTCTATTGAAACAAGTACA
GCCCTAGGTTTGATTGTTATGTTTGCACAATTTTCACAGCAGTACTACCAGCCTATTATC
CAAGTTGCAGCGAGTTGGGGAAGCCTTCAGTTGGCCTTTACTGGAGCTGAACGAATTCAG
GAAATGTTTGATGCAGAGGAGGAAATCCGACCTGAAAAGGCTCCAACCTTCACTAAGTTG
CAAGAAAGTGTTGAAATCAGTCATATCGATTTTTCATACTTGCCTGATAAACCTATTTTG
AAAGATGTCAGCATTTCTGCCCCTAAAGGCCAGATGACAGCAGTTGTTGGGCCTACAGGT
TCAGGAAAAACGACTATTATGAACCTCATCAATCGCTTTTATGATGTTGATGCTGGTGGT
ATTTATTTTGATGGTAAAGACATTCGTGGCTATGACTTAGATAGTCTTAGAAGCAAGGTG
GGAATTGTATTGCAAGATTCGGTCTTGTTTAGCGGAACGATTCGAGACAATATCCGATTT
GGTGTGCCAGATGCTAATCAGGAAATGGTTGAGGTAGCAGCAAAAGCAACCCACATTCAC
GACTATATCGAAAGTTTGCCTGATAAGTACGATACTCTTATTGATGATGACCAGAGCATC
TTTTCAACAGGGCAGAAGCAATTGATTTCAATCGCTCGAACCCTGATGACAGATCCAGAA
GTTCTCATTCTCGATGAAGCAACTTCAAACGTAGATACGGTGACGGAAAGCAAGATTCAG
CATGCCATGGAGGTGGTTGTAGCAGGTAGAACTAGTTTCGTCATTGCCCACCGCTTGAAA
ACCATTCTCAATGCAGATCAGATTATTGTCCTTAAAGATGGAGAAGTCATTGAACGTGGT
AACCACCATGAACTTTTGAAGCTAGGTGGCTTTTATTCAGAACTCTATCACAATCAATTT
GTTTTCGAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPCG_2040 [new locus tag: SPCG_RS10815 ]
- symbol: SPCG_2040
- description: ABC transporter, ATP-binding/permease protein
- length: 603
- theoretical pI: 5.67634
- theoretical MW: 67408.8
- GRAVY: 0.217081
⊟Function[edit | edit source]
- ⊞TIGRFAM: ABC transporter, permease/ATP-binding protein (TIGR02204; HMM-score: 371.8)Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 367.6)Transport and binding proteins Other lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 367.6)Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR01846; HMM-score: 331.4)Transport and binding proteins Other antigen peptide transporter 2 (TIGR00958; HMM-score: 321.5)and 71 more
- TheSEED :
- Lipid A export ATP-binding/permease protein MsbA
- ⊞PFAM: ABC_membrane (CL0241) ABC_membrane; ABC transporter transmembrane region (PF00664; HMM-score: 141.1)and 18 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: ACB91292 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MAVANCAKYNIRRSKMKTVQFFWHYFKVYKFSFVVVILMIVLATFAQALFPVFSGQAVTQLANLVQAYQNGNPELVWQSLSGIMVNLGLLVLVLFISSVIYMCLMTRVIAESTNEMRKGLFGKLAQLTVSFFDRRQDGDILSHFTSDLDNILQAFNESLIQVMSNIVLYIGLILVMFSRNVTLALITIASTPLAFLMLIFIVKMARKYTNLQQKEVGKLNAYMDESISGQKAVIVQGIQEDMMAGFLEQNERVRKATFKGRMFSGILFPVMNGMSLINTAIVIFAGSAVLLNDKSIETSTALGLIVMFAQFSQQYYQPIIQVAASWGSLQLAFTGAERIQEMFDAEEEIRPEKAPTFTKLQESVEISHIDFSYLPDKPILKDVSISAPKGQMTAVVGPTGSGKTTIMNLINRFYDVDAGGIYFDGKDIRGYDLDSLRSKVGIVLQDSVLFSGTIRDNIRFGVPDANQEMVEVAAKATHIHDYIESLPDKYDTLIDDDQSIFSTGQKQLISIARTLMTDPEVLILDEATSNVDTVTESKIQHAMEVVVAGRTSFVIAHRLKTILNADQIIVLKDGEVIERGNHHELLKLGGFYSELYHNQFVFE
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: gpi < SPCG_2038 < guaA < SPCG_2040
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1900 PneumoExpress