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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 16-DEC-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae CGSP14
- locus tag: SPCG_RS04865 [old locus tag: SPCG_0935 ]
- pan locus tag?: PNEUPAN001956000
- symbol: infC
- pan gene symbol?: infC
- synonym:
- product: translation initiation factor IF-3
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPCG_RS04865 [old locus tag: SPCG_0935 ]
- symbol: infC
- product: translation initiation factor IF-3
- replicon: chromosome
- strand: +
- coordinates: 916174..916704
- length: 531
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_010582 (916174..916704) NCBI
- BioCyc: SPCG_RS04865 BioCyc
- MicrobesOnline: see SPCG_0935
- PneumoBrowse for strain D39V: SPV_0847 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
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241
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361
421
481GTGAAAACCATAGCAAAGCAAGACTTATTCATCAATGATGAGATTCGTGTACGTGAAGTT
CGCTTGATTGGTCTTGAAGGAGAACAGCTAGGTATCAAGCCACTCAGTGAAGCGCAAGCT
TTGGCTGATAACGCTAATGTTGACCTAGTATTGATTCAACCCCAAGCCAAACCGCCTGTT
GCAAAAATTATGGACTACGGTAAGTTCAAATTTGAGTACCAGAAGAAGCAAAAAGAACAA
CGTAAAAAACAAAGCGTTGTTACTGTGAAAGAAGTTCGTCTAAGTCCAACAATTGACAAG
GGTGACTTTGATACAAAACTTCGTAATGCACGTAAGTTCCTTGAAAAAGGAAATAAAGTT
AAGGTATCTATTCGCTTTAAGGGTCGTATGATTACCCATAAAGAGATTGGTGCAAAAGTT
TTAGCCGAGTTTGCTGAAGCAACTCAAGATATTGCCATCATCGAACAACGTGCTAAAATG
GATGGACGTCAAATGTTCATGCAATTGGCGCCAGCGACTGACAAAAAATAA60
120
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531
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPCG_RS04865 [old locus tag: SPCG_0935 ]
- symbol: InfC
- description: translation initiation factor IF-3
- length: 176
- theoretical pI: 10.5784
- theoretical MW: 20083.4
- GRAVY: -0.54375
⊟Function[edit | edit source]
- TIGRFAM: Protein synthesis Translation factors translation initiation factor IF-3 (TIGR00168; HMM-score: 215)
- TheSEED: see SPCG_0935
- PFAM: no clan defined IF3_C; Translation initiation factor IF-3, C-terminal domain (PF00707; HMM-score: 122.7)IF3_N; Translation initiation factor IF-3, N-terminal domain (PF05198; HMM-score: 99.2)and 1 morePolo-box (CL0708) Polo_box_3; Polo box domain (PF18544; HMM-score: 15.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9932
- Cytoplasmic Membrane Score: 0
- Cell wall & surface Score: 0
- Extracellular Score: 0.0068
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.009476
- TAT(Tat/SPI): 0.00067
- LIPO(Sec/SPII): 0.000789
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000848180 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKTIAKQDLFINDEIRVREVRLIGLEGEQLGIKPLSEAQALADNANVDLVLIQPQAKPPVAKIMDYGKFKFEYQKKQKEQRKKQSVVTVKEVRLSPTIDKGDFDTKLRNARKFLEKGNKVKVSIRFKGRMITHKEIGAKVLAEFAEATQDIAIIEQRAKMDGRQMFMQLAPATDKK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: infC > rpmI > rplT > SPCG_RS04880
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0847 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]