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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 02-MAY-2018
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae D39
- locus tag: SPD_0298 [new locus tag: SPD_RS01635 ]
- pan locus tag?: PNEUPAN001118000
- symbol: yajC-1
- pan gene symbol?: yajC-1
- synonym: yajC
- product: preprotein translocase, YajC subunit
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPD_0298 [new locus tag: SPD_RS01635 ]
- symbol: yajC-1
- product: preprotein translocase, YajC subunit
- replicon: chromosome
- strand: +
- coordinates: 296714..296980
- length: 267
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP000410 (296714..296980) NCBI
- BioCyc: see SPD_RS01635
- MicrobesOnline: 2017244 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_0298 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241GTGATTGTCTTGGCAGTGAGTCCCCTTTTACTGTCAAGCTTTCATTCTATTCGTCAGCAA
AAGTTGCTTCGCAAACAGATGGAGCAACGACAAGAGTATTTAGCTTCTTTAACATCTGGT
GATGAAGTGTTGTTATTGTCTGGAATTCATGGAAAAATCATTTCTATCCAAGATGACTTG
GTCTCCTTGCAGATTGCAAAAGGTGTGGTCATCTATGTAGAAAAGGAAAGTGTAATGGGA
AAGACAAAAGAACTGCTTTTTAAGTAG60
120
180
240
267
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPD_0298 [new locus tag: SPD_RS01635 ]
- symbol: YajC-1
- description: preprotein translocase, YajC subunit
- length: 88
- theoretical pI: 9.66177
- theoretical MW: 9881.67
- GRAVY: 0.234091
⊟Function[edit | edit source]
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 1.78
- Cytoplasmic Membrane Score: 8.16
- Cellwall Score: 0.06
- Extracellular Score: 0.01
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.013764
- TAT(Tat/SPI): 0.000373
- LIPO(Sec/SPII): 0.002357
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MIVLAVSPLLLSSFHSIRQQKLLRKQMEQRQEYLASLTSGDEVLLLSGIHGKIISIQDDLVSLQIAKGVVIYVEKESVMGKTKELLFK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulators: CcpA regulon, RegR (repression) regulon
CcpA (TF) important in Global catabolite repression; RegPrecise transcription unit transferred from TIGR4 data RegPrecise RegR (TF) important in Hyaluronate utilization; RegPrecise transcription unit transferred from TIGR4 data RegPrecise
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0298 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.