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TIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 02-MAY-2018

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae D39
  • locus tag: SPD_0938
  • pan locus tag?:
  • symbol: SPD_0938
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPD_0938
  • symbol: SPD_0938
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 947687..948274
  • length: 588
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP000410 (947687..948274) NCBI
  • BioCyc:
  • MicrobesOnline: 2017844 MicrobesOnline
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGGAAGAAGAAAATCATAAAAAATATAAAGTCTACATTCGAGAAACGTCTTCTTACTTT
    GTCTATAATAAAGAAAACATGGATAATAATTGTTTCATCAAGGGTAGGACCTTAATCAGA
    CAATTGAGCAACGATAGCCAAAAACTCCCCTATAGACGACCAACTTTAAAAAGTCTTCAA
    GAGAAGATTTCTGAAATTAATCTTATGATTGAACTATCTAACACGAACAAACAATACCAA
    GAAATCAAAGATGAGCTTGTATTAGAAATTGCAGAGATTGATATGAAGCTAGAAGAAACC
    CAAGAAAAAATCGCCACCTTAAACAAGATGGCGGAAGTCCTTATCAATTTGAAGAGTGAA
    GATGAGATCGGTAGAAAATTAGCTAAGTATGATTTTGACCAAATGAACATGACGGAATCA
    ATAATGTTAGATCGACTCAATACAGATATTTTAAAATTACAACAGGAACTTAGTAATGAA
    ATTAATAAATATGAGGAGATAGCTAGAAGATTGGATTTGTTTGTGAAAATTATTAATACC
    AATAAATTTACAGTTCTAAAATTTCACGAGAATGCCTTACTAGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    588

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPD_0938
  • symbol: SPD_0938
  • description: hypothetical protein
  • length: 195
  • theoretical pI: 5.07197
  • theoretical MW: 23280.6
  • GRAVY: -0.679487

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Amino acid biosynthesis Aspartate family S-methyl-5-thioribose-1-phosphate isomerase (TIGR00512; EC 5.3.1.23; HMM-score: 11.6)
    Signal transduction Regulatory functions DNA interactions Zn(II)-responsive transcriptional regulator (TIGR02043; HMM-score: 11.4)
    and 1 more
    SH3 domain protein (TIGR04211; HMM-score: 7)
  • TheSEED  :
    • Protein involved in lantibiotic (srt) production
    • Tn5252, relaxase
  • PFAM:
    no clan defined Streptin-Immun; Lantibiotic streptin immunity protein (PF11083; HMM-score: 153.1)
    and 5 more
    SNARE-fusion (CL0445) Syntaxin_2; Syntaxin-like protein (PF14523; HMM-score: 20.4)
    ISOCOT_Fold (CL0246) IF-2B; Initiation factor 2 subunit family (PF01008; HMM-score: 12.5)
    no clan defined DUF1664; Protein of unknown function (DUF1664) (PF07889; HMM-score: 11.2)
    Laminin_II; Laminin Domain II (PF06009; HMM-score: 10.4)
    Syntaxin-6_N; Syntaxin 6, N-terminal (PF09177; HMM-score: 8.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.5516
    • Cytoplasmic Membrane Score: 0.1055
    • Cell wall & surface Score: 0.0003
    • Extracellular Score: 0.3426
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00446
    • TAT(Tat/SPI): 0.000294
    • LIPO(Sec/SPII): 0.000534
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MEEENHKKYKVYIRETSSYFVYNKENMDNNCFIKGRTLIRQLSNDSQKLPYRRPTLKSLQEKISEINLMIELSNTNKQYQEIKDELVLEIAEIDMKLEETQEKIATLNKMAEVLINLKSEDEIGRKLAKYDFDQMNMTESIMLDRLNTDILKLQQELSNEINKYEEIARRLDLFVKIINTNKFTVLKFHENALLE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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