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TIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 02-MAY-2018

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae D39
  • locus tag: SPD_1270
  • pan locus tag?:
  • symbol: SPD_1270
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPD_1270
  • symbol: SPD_1270
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1298662..1298967
  • length: 306
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP000410 (1298662..1298967) NCBI
  • BioCyc:
  • MicrobesOnline: 2018165 MicrobesOnline
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGTTCCCAGTTGAAACAGAGGAAATTACCTACAAACGTAAGAAATCTAAAGGGAAACGT
    CAAGCTATTCTTGCCCAATTTGATTCAGAAGAAGTTCATCATCAAGTAGAAGAGAGCATT
    TGCCCTGATTGTCAGGACGATTTAAAAGAGATTGGAGCGAGCCTTCAACGACAAGAATTG
    GTCTTTATTCCTGCGCAATTAAAAAGAGTGGATCATATCCAACACGCTTACAAATGCCAA
    ACATGCAGTAAGAATAATCCAAGTGATAAAATTGTAAAAGCTCCTATTCCTAAAGCCCCT
    TTATAA
    60
    120
    180
    240
    300
    306

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPD_1270
  • symbol: SPD_1270
  • description: hypothetical protein
  • length: 101
  • theoretical pI: 7.96953
  • theoretical MW: 11571.2
  • GRAVY: -0.724752

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Mobile element protein
  • PFAM:
    no clan defined zf-IS66; zinc-finger binding domain of transposase IS66 (PF13005; HMM-score: 49.6)
    and 9 more
    TackOD1; Thaumarchaeal output domain 1 (PF18551; HMM-score: 19.7)
    DUF6487; Domain of unknown function (DUF6487) (PF20097; HMM-score: 17)
    Zn_Beta_Ribbon (CL0167) Zn-ribbon_8; Zinc ribbon domain (PF09723; HMM-score: 14.8)
    no clan defined Zn_Tnp_IS91; Transposase zinc-binding domain (PF14319; HMM-score: 14.7)
    Zn_Beta_Ribbon (CL0167) DZR; Double zinc ribbon (PF12773; HMM-score: 14.6)
    DZR_2; Double zinc ribbon domain (PF18912; HMM-score: 13.9)
    no clan defined DUF5926; Family of unknown function (DUF5926) (PF19348; HMM-score: 13.8)
    Zn_Beta_Ribbon (CL0167) zinc-ribbons_6; zinc-ribbons (PF07191; HMM-score: 10.9)
    zf-FPG_IleRS; Zinc finger found in FPG and IleRS (PF06827; HMM-score: 10.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.941
    • Cytoplasmic Membrane Score: 0.0007
    • Cell wall & surface Score: 0.0155
    • Extracellular Score: 0.0428
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004571
    • TAT(Tat/SPI): 0.000619
    • LIPO(Sec/SPII): 0.000707
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MFPVETEEITYKRKKSKGKRQAILAQFDSEEVHHQVEESICPDCQDDLKEIGASLQRQELVFIPAQLKRVDHIQHAYKCQTCSKNNPSDKIVKAPIPKAPL

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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