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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 02-MAY-2018
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae D39
- locus tag: SPD_1302 [new locus tag: SPD_RS06945 ]
- pan locus tag?: PNEUPAN002798000
- symbol: SPD_1302
- pan gene symbol?: nfr1
- synonym:
- product: oxidoreductase, putative
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPD_1302 [new locus tag: SPD_RS06945 ]
- symbol: SPD_1302
- product: oxidoreductase, putative
- replicon: chromosome
- strand: +
- coordinates: 1320206..1321450
- length: 1245
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP000410 (1320206..1321450) NCBI
- BioCyc: see SPD_RS06945
- MicrobesOnline: 2018197 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_1302 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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1201ATGAAATTTGTTGGACTTGTTGGATCAAACTACGATCAATCATATAACCGCAAACTCTTG
GAATTTATCCGTCGCAATTTCAAATTCAAATTTGAATTAGAAGTACTTGAAATCGACGAA
GTTCCAATGTTTAACCAAGACGAAAAATGGGACGAAAGCTTCCAATTGCGTTTCTTGTAT
AACAAGATTACACGTGCTGATGGTGTCATTATCGCCACTCCTGAGCACAACCACACTATC
TCAGCTTCACTCAAATCTGTACTTGAATGGCTTTCATACGAAGTTCATCCATTTGAAAAC
AAGCCTGTTATGATTGTGGGTGCATCATACTATGACCAAGGAACATCACGTGCTCAAGTT
CACCTTCGTAAAATCCTTGATGCTCCAGGTGTTAATGCCTACACGCTTCCAGGTAACGAA
TTCCTTCTTGGTAAAGCTAAGGAAGCTTTTGATAACAACGGAAATATCACCAACGAAGGC
ACTGTTAAATTCCTTGAAACTTGCTTAGATAACTTTGTTAAATACGTAGGAGTCGTTTCG
AAATTGAAAAAACCAAAACCAATCGAATCAGAAGACTTGGATTGTGGAAAACCAATCGCT
ACAACCATCACAGAAGTTGACCCTGACGATCCAGAATGGGTAGAAAAAGTTGCAGCAATC
ACTGGTGCTGTTTCTGGTGATACCTATGTCAAATTGGACCACGGTATCCTAACAGTTAAC
CAAATTGATATGTTCTTGAAAGCTATGCCATTTGAATTGACATACGCTGACGACAACAAC
CAATTCCTCTACTACAACAACGCTCACCAAGATCCAGACACTATGTTCGCTAAACGTGTA
CCACCTCAATCAGGTAGCCGTATGTCGACTGTTCATGGTTCTCTTCCACCAGCACGTATG
AAGAACGTAGAGTGGGTTATCGGAACACTTCGCAACGGAAACCAAGAATACGTCCGTACG
ATCGTTCCAGGTTCTCCTGCAGGTGTTATCAACACTCACAACTACCAAGCAATGTACTAT
CCTGATGGATCATACGCTGGTATCAATGAAATCGTCTTTAACTTCCAACCATGGCTTGAC
TGGTACCTAAAAGAGACTGGTCAACGTTTGGTGGGTGGTAGCGGACCATTTGCTCCTGCT
GCCGGAGGTCATGGAGACGCCGATGCTACTTCTGGCGCTTCTGATTCAGGGGATGTTGGA
GGCCACGGTGGTGACGCAGACGCTACAGCCGGTGCAAGTTACTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPD_1302 [new locus tag: SPD_RS06945 ]
- symbol: SPD_1302
- description: oxidoreductase, putative
- length: 414
- theoretical pI: 4.81762
- theoretical MW: 45835
- GRAVY: -0.379952
⊟Function[edit | edit source]
- TIGRFAM: Central intermediary metabolism Sulfur metabolism FMN reductase (TIGR03567; EC 1.5.1.38; HMM-score: 23.5)and 3 moreCellular processes Detoxification arsenical resistance protein ArsH (TIGR02690; HMM-score: 17.2)LLM-partnered FMN reductase, CE1759 family (TIGR04037; EC 1.-.-.-; HMM-score: 15.3)FMN reductase (TIGR03566; EC 1.5.1.-; HMM-score: 11.5)
- TheSEED :
- FMN reductase-like protein EF_1227
- PFAM: Flavoprotein (CL0042) FMN_red; NADPH-dependent FMN reductase (PF03358; HMM-score: 105.6)PAS_Fold (CL0183) PAS_10; PAS domain (PF13596; HMM-score: 98.5)and 1 moreFlavoprotein (CL0042) Flavodoxin_2; Flavodoxin-like fold (PF02525; HMM-score: 16)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001519
- TAT(Tat/SPI): 0.000112
- LIPO(Sec/SPII): 0.000181
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKFVGLVGSNYDQSYNRKLLEFIRRNFKFKFELEVLEIDEVPMFNQDEKWDESFQLRFLYNKITRADGVIIATPEHNHTISASLKSVLEWLSYEVHPFENKPVMIVGASYYDQGTSRAQVHLRKILDAPGVNAYTLPGNEFLLGKAKEAFDNNGNITNEGTVKFLETCLDNFVKYVGVVSKLKKPKPIESEDLDCGKPIATTITEVDPDDPEWVEKVAAITGAVSGDTYVKLDHGILTVNQIDMFLKAMPFELTYADDNNQFLYYNNAHQDPDTMFAKRVPPQSGSRMSTVHGSLPPARMKNVEWVIGTLRNGNQEYVRTIVPGSPAGVINTHNYQAMYYPDGSYAGINEIVFNFQPWLDWYLKETGQRLVGGSGPFAPAAGGHGDADATSGASDSGDVGGHGGDADATAGASY
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1302 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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