From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 02-MAY-2018

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae D39
  • locus tag: SPD_1791 [new locus tag: SPD_RS09540 ]
  • pan locus tag?: PNEUPAN003614000
  • symbol: SPD_1791
  • pan gene symbol?: aspC_2
  • synonym:
  • product: aminotransferase, class I

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPD_1791 [new locus tag: SPD_RS09540 ]
  • symbol: SPD_1791
  • product: aminotransferase, class I
  • replicon: chromosome
  • strand: -
  • coordinates: 1785880..1787094
  • length: 1215
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGAAAGAATATAACAAGTCTAGTAAGTTAGAGCATGTTGCTTATGATATCCGTGGTCCT
    GTATTGGAAGAAGCCATGCGGATGCGAGCGAATGGAGAAAAGATTTTACGTCTGAATACA
    GGAAATCCAGCAGAATTTGGCTTTACAGCGCCAGACGAGGTCATTCATGACTTGATTATG
    AATGCGCGTGATAGTGAAGGCTATTCTGACTCCAAAGGAATTTTCTCAGCCCGTAAGGCC
    ATCATGCAGTATTGCCAGCTGAAGAAATTCCCAAACGTAGATATTGATGATATTTACCTT
    GGAAATGGTGTCAGTGAGTTGATTGTCATGTCCATGCAGGGGCTTTTGGACAATGGGGAT
    GAGGTCTTAGTGCCAATGCCAGACTATCCTCTATGGACGGCGGCTGTCAGCCTAGCTGGA
    GGAAATGCCGTTCACTATATCTGTGATGAAGCTGTTGAATGGTACCCAGATATTGACGAT
    ATCAAGTCAAAAATCACTTCCAATACCAAGGCAATCGTCCTTATCAATCCAAATAACCCA
    ACTGGAGCCCTTTATCCTAAGGAACTCTTGCTGGAGATTATTGAGATTGCCCGTCAAAAT
    GATTTGATTATCTTTGCGGATGAAATCTATGACCGCATGGTAATGGACGGACATGTGCAT
    ACGCCTGTGGCGAGCTTGGCACCAGATGTCTTCTGTGTCAGCATGAATGGTCTGTCAAAA
    TCCCACCGCATAGCAGGTTTCCGTGTGGGTTGGATGGTCTTGTCTGGCCCTAAGACTCAT
    GTTAAGGGCTATATCGAAGGGCTCAATATGCTGTCCAATATGCGCCTTTGCTCTAACGTT
    TTGGCCCAACAAGTCGTACAAACTTCCTTGGGGGGTCACCAATCAGTCGATGAATTGCTT
    CTTCCTGGTGGACGAATCTACGAGCAAAGAAATTTCATCTATAATGCCATTCAAGATATT
    CCAGGTTTGTCTGCCGTTAAACCCAAGGCGGGGCTCTATATCTTCCCAAAAATCGACCGC
    AATATGTACCGTATCGATGATGATGAGCAGTTTGTCCTTGATTTCTTGAAGCAGGAAAAG
    GTTCTCTTGGTTCATGGTCGAGGCTTTAACTGGCAGGAACCAGACCACTTCCGTATCGTT
    TACCTTCCTCGTGTTGATGAGTTAGCCCAAATCCAAGAAAAGATGACTCGTTTCTTGAAA
    CAGTATCGTAGATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1215

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPD_1791 [new locus tag: SPD_RS09540 ]
  • symbol: SPD_1791
  • description: aminotransferase, class I
  • length: 404
  • theoretical pI: 5.63607
  • theoretical MW: 45741.3
  • GRAVY: -0.199752

⊟Function[edit | edit source]

  • TIGRFAM:
    tyrosine/nicotianamine family aminotransferase (TIGR01265; HMM-score: 227.3)
    Metabolism Energy metabolism Amino acids and amines tyrosine aminotransferase (TIGR01264; EC 2.6.1.5; HMM-score: 217.1)
    and 17 more
    LL-diaminopimelate aminotransferase (TIGR03540; EC 2.6.1.83; HMM-score: 137.5)
    putative C-S lyase (TIGR04350; EC 4.4.-.-; HMM-score: 96)
    Metabolism Amino acid biosynthesis Histidine family histidinol-phosphate transaminase (TIGR01141; EC 2.6.1.9; HMM-score: 94.2)
    succinyldiaminopimelate transaminase (TIGR03538; EC 2.6.1.17; HMM-score: 86.3)
    Cellular processes Cellular processes Biosynthesis of natural products capreomycidine synthase (TIGR03947; HMM-score: 84.1)
    succinyldiaminopimelate transaminase (TIGR03537; EC 2.6.1.17; HMM-score: 77.2)
    succinyldiaminopimelate transaminase (TIGR03539; EC 2.6.1.17; HMM-score: 69.2)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Heme, porphyrin, and cobalamin threonine-phosphate decarboxylase (TIGR01140; EC 4.1.1.81; HMM-score: 67.1)
    LL-diaminopimelate aminotransferase (TIGR03542; EC 2.6.1.83; HMM-score: 61.7)
    beta-methylarginine biosynthesis bifunctional aminotransferase (TIGR04544; EC 2.6.-.-; HMM-score: 58.7)
    Metabolism Energy metabolism Amino acids and amines aspartate 4-decarboxylase (TIGR03801; EC 4.1.1.12; HMM-score: 29.2)
    enduracididine biosynthesis enzyme MppQ (TIGR04461; EC 2.-.-.-; HMM-score: 24.7)
    Unknown function Enzymes of unknown specificity cysteine desulfurase family protein (TIGR01977; HMM-score: 23.7)
    Metabolism Energy metabolism Amino acids and amines methionine gamma-lyase (TIGR01328; EC 4.4.1.11; HMM-score: 14.3)
    enduracididine biosynthesis enzyme MppP (TIGR04462; EC 2.-.-.-; HMM-score: 13.9)
    cysteine desulfurase NifS (TIGR03402; EC 2.8.1.7; HMM-score: 11.4)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Heme, porphyrin, and cobalamin glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713; EC 5.4.3.8; HMM-score: 10.1)
  • TheSEED  :
    • Alanine transaminase (EC 2.6.1.2)
    Amino Acids and Derivatives Alanine, serine, and glycine Alanine biosynthesis  Alanine transaminase (EC 2.6.1.2)
    and 2 more
    Amino Acids and Derivatives Glutamine, glutamate, aspartate, asparagine; ammonia assimilation Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis  Aspartate aminotransferase (EC 2.6.1.1)
    Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine Threonine and Homoserine Biosynthesis  Aspartate aminotransferase (EC 2.6.1.1)
  • PFAM:
    PLP_aminotran (CL0061) Aminotran_1_2; Aminotransferase class I and II (PF00155; HMM-score: 152)
    and 4 more
    Aminotran_5; Aminotransferase class-V (PF00266; HMM-score: 18.6)
    DegT_DnrJ_EryC1; DegT/DnrJ/EryC1/StrS aminotransferase family (PF01041; HMM-score: 18.5)
    MHC (CL0343) MHC_II_alpha; Class II histocompatibility antigen, alpha domain (PF00993; HMM-score: 13.7)
    PLP_aminotran (CL0061) Beta_elim_lyase; Beta-eliminating lyase (PF01212; HMM-score: 10.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9876
    • Cytoplasmic Membrane Score: 0.0041
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0082
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.009111
    • TAT(Tat/SPI): 0.001066
    • LIPO(Sec/SPII): 0.00128
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKEYNKSSKLEHVAYDIRGPVLEEAMRMRANGEKILRLNTGNPAEFGFTAPDEVIHDLIMNARDSEGYSDSKGIFSARKAIMQYCQLKKFPNVDIDDIYLGNGVSELIVMSMQGLLDNGDEVLVPMPDYPLWTAAVSLAGGNAVHYICDEAVEWYPDIDDIKSKITSNTKAIVLINPNNPTGALYPKELLLEIIEIARQNDLIIFADEIYDRMVMDGHVHTPVASLAPDVFCVSMNGLSKSHRIAGFRVGWMVLSGPKTHVKGYIEGLNMLSNMRLCSNVLAQQVVQTSLGGHQSVDELLLPGGRIYEQRNFIYNAIQDIPGLSAVKPKAGLYIFPKIDRNMYRIDDDEQFVLDFLKQEKVLLVHGRGFNWQEPDHFRIVYLPRVDELAQIQEKMTRFLKQYRR

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPD_1791&oldid=8374"