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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 02-MAY-2018
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae D39
- locus tag: SPD_1959 [new locus tag: SPD_RS10370 ]
- pan locus tag?: PNEUPAN003814000
- symbol: SPD_1959
- pan gene symbol?: ulaA2
- synonym:
- product: PTS system, IIC component, putative
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPD_1959 [new locus tag: SPD_RS10370 ]
- symbol: SPD_1959
- product: PTS system, IIC component, putative
- replicon: chromosome
- strand: -
- coordinates: 1927259..1928605
- length: 1347
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP000410 (1927259..1928605) NCBI
- BioCyc: see SPD_RS10370
- MicrobesOnline: 2018776 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_1959 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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1321ATGATGAAGTTCATATTGGATATTGTTAGTACACCAGCTATTTTAGTAGCTTTAATTGCA
ATTTTAGGATTAGTTCTTCAGAAGAAGAAATTACCTGATATTATTAAAGGTGGAATTAAG
ACCTTTGTTGGTTTCTTAGTTGTATCTGGTGGTGCAGGAATTGTACAAAATTCTTTAAAT
CCATTTGGTACCATGTTTGAGCATGCTTTTCATTTATCTGGCGTTGTGCCGAATAATGAA
GCAATTGTAGCTGTAGCTTTAACAACATATGGCTCAGCTACTGCAATGATTATGTTTGCA
GGCATGGTGTTCAATATCTTAATCGCTCGTTTTACTCGATTTAAATATATCTTTTTAACA
GGGCACCACACTCTATATATGGCGTGTATGATTGCGGTCATTTTATCAGTTGCTGGCTTT
ACTAGCTTGCCTCTTATCTTACTAGGAGGATTAGCACTCGGTATTATTATGAGTATTTCC
CCAGCATTTGTGCAAAAATATATGGTTCAATTAACTGGAAATGACAAGGTGGCTTTAGGT
CATTTCAGTTCTTTGGGATATTGGTTGAGTGGTTTTACTGGTAGCCTTATCGGTGACAAA
TCAAAATCAACAGAGGACATTAAATTTCCAAAGAGTTTAGCTTTTTTACGTGATAGTACT
GTTAGTATTACTTTATCCATGGCAGTTATTTACATTATTGTAGCTATCTTTGCAGGGTCA
GAATATATAGAAAAAGAAATCAGTAGTGGTACAAGTGGTCTAGTTTATGCTTTGCAATTA
GCAGGTCAATTTGCAGCAGGGGTATTTGTTATTTTAGCAGGTGTTCGCCTTATTTTGGGC
GAAATTGTTCCAGCCTTTAAAGGTATTTCAGAGCGTCTTGTACCTAATTCAAAACCTGCT
TTGGATTGTCCGATTGTTTATACTTATGCACCCAATGCAGTTCTAATTGGATTTATCTCT
AGTTTTATTGGTGGTTTAGTAAGTATGGCAATTATGATTGCTTCAGGAACGGTTGTTATC
TTACCAGGTGTTGTGCCTCATTTCTTCTGTGGAGCGACTGCAGGTGTCATTGGGAATGCA
TCTGGTGGTGTTCGTGGAGCCACTATTGGAGCATTTTTACAAGGTATTTTAATCAGTTTT
CTTCCAGTCTTTTTAATGCCAGTTTTGGGAGGACTTGGTTTCCAAGGATCAACTTTCTCA
GATGCAGATTTTGGTCTATCAGGAATTATTTTAGGAATGTTAAATCAATTTGGCTCACAA
GCAGGCATTGTGATTGGTCTTGTTCTTATTCTAGCAGTTATGTTTGGAGTATCCTTTATT
AAAAAGCCATCTGCAAAGGAGGAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPD_1959 [new locus tag: SPD_RS10370 ]
- symbol: SPD_1959
- description: PTS system, IIC component, putative
- length: 448
- theoretical pI: 9.41441
- theoretical MW: 46861.6
- GRAVY: 0.981473
⊟Function[edit | edit source]
- TIGRFAM: Unknown function Enzymes of unknown specificity F420-dependent oxidoreductase, MSMEG_4879 family (TIGR03564; EC 1.-.-.-; HMM-score: 12.5)
- TheSEED :
- PTS system, IIC component, L-ascorbate family
- PFAM: no clan defined EIIC-GAT; PTS system sugar-specific permease component (PF03611; HMM-score: 488.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 11
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0001
- Cytoplasmic Membrane Score: 0.9977
- Cell wall & surface Score: 0
- Extracellular Score: 0.0022
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.03824
- TAT(Tat/SPI): 0.000517
- LIPO(Sec/SPII): 0.01729
- predicted transmembrane helices (TMHMM): 11
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MMKFILDIVSTPAILVALIAILGLVLQKKKLPDIIKGGIKTFVGFLVVSGGAGIVQNSLNPFGTMFEHAFHLSGVVPNNEAIVAVALTTYGSATAMIMFAGMVFNILIARFTRFKYIFLTGHHTLYMACMIAVILSVAGFTSLPLILLGGLALGIIMSISPAFVQKYMVQLTGNDKVALGHFSSLGYWLSGFTGSLIGDKSKSTEDIKFPKSLAFLRDSTVSITLSMAVIYIIVAIFAGSEYIEKEISSGTSGLVYALQLAGQFAAGVFVILAGVRLILGEIVPAFKGISERLVPNSKPALDCPIVYTYAPNAVLIGFISSFIGGLVSMAIMIASGTVVILPGVVPHFFCGATAGVIGNASGGVRGATIGAFLQGILISFLPVFLMPVLGGLGFQGSTFSDADFGLSGIILGMLNQFGSQAGIVIGLVLILAVMFGVSFIKKPSAKEE
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1959 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]