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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 21-MAR-2025
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae D39
- locus tag: SPD_RS02355 [old locus tag: SPD_0438 ]
- pan locus tag?: PNEUPAN001346000
- symbol: SPD_RS02355
- pan gene symbol?: bcrC_1
- synonym:
- product: phosphatase PAP2 family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPD_RS02355 [old locus tag: SPD_0438 ]
- symbol: SPD_RS02355
- product: phosphatase PAP2 family protein
- replicon: chromosome
- strand: +
- coordinates: 441928..442578
- length: 651
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_008533 (441928..442578) NCBI
- BioCyc: G1G6V-484 BioCyc
- MicrobesOnline: see SPD_0438
- PneumoBrowse for strain D39V: SPV_0438 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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601ATGAAAGATAAACAAACATTTTTAATGAAGGGCAGTTTTGCCCTTTTACTTTTCGTTATT
CTTGGCTACATGGTCAAATTTTACCCTGAAACGCTGGTCAATTTTGACCAATCGATTCAG
ACTGCCATTCGAGGAGACTTACCAGATTATTTGACTATTCTTTTTCGAGCCCTCACACGT
CTGATTGATATCCCAGTGATTATCACTTGGGTTGTCATTACAGCTTTTGTCTTTTATCGT
AAGCGATGGAAGATAGAAAGTTTCTTCATGCTGGGAAATCTGGCTTTGGCAGGTCTTTTA
ATCGTGACCTTTAAAAATATCTACCAGCGCCCACGACCAGCTATCTTACATCTTGTGGAG
GAGAAGGGATTTTCCTTCCCAAGTGGGCATTCTCTGGCTGTAACCTTGATGGTAGGCACT
CTGATTGTCATTCTCAGTCAACGAATTAAAAATCCAGTCTGGAGAAAAATCGTACAAATT
GTCCTTGGCCTCTACCTAGTCAGTGTGCTGGTATCAAGAGTCTATCTGGGAGTTCATTAC
CCATCAGACGTCCTTGCCAGTCTCTGTGTGGGCTTGGGAGTCCTGTTTATCGAGTTTCCC
TTCTATGACAAGCTCCGCTTCCAATGGCGATTTAAAGGCAAACAGAAGTGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPD_RS02355 [old locus tag: SPD_0438 ]
- symbol: SPD_RS02355
- description: phosphatase PAP2 family protein
- length: 216
- theoretical pI: 10.5674
- theoretical MW: 24927.8
- GRAVY: 0.599074
⊟Function[edit | edit source]
- reaction: EC 3.1.3.-? ExPASy
- TIGRFAM:
- TheSEED: see SPD_0438
- PFAM: pap2 (CL0525) PAP2; PAP2 superfamily (PF01569; HMM-score: 79.9)and 4 morePAP2_3; PAP2 superfamily (PF14378; HMM-score: 31.4)PAP2_C; PAP2 superfamily C-terminal (PF14360; HMM-score: 18.8)no clan defined Tmemb_14; Transmembrane proteins 14C (PF03647; HMM-score: 10.1)S_2TMBeta; SMODS-associating 2TM, beta-strand rich effector domain (PF18153; HMM-score: 8.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 6
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0002
- Cytoplasmic Membrane Score: 0.9986
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.0011
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.044391
- TAT(Tat/SPI): 0.00073
- LIPO(Sec/SPII): 0.015547
- predicted transmembrane helices (TMHMM): 6
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKDKQTFLMKGSFALLLFVILGYMVKFYPETLVNFDQSIQTAIRGDLPDYLTILFRALTRLIDIPVIITWVVITAFVFYRKRWKIESFFMLGNLALAGLLIVTFKNIYQRPRPAILHLVEEKGFSFPSGHSLAVTLMVGTLIVILSQRIKNPVWRKIVQIVLGLYLVSVLVSRVYLGVHYPSDVLASLCVGLGVLFIEFPFYDKLRFQWRFKGKQK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0438 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]