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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 02-FEB-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae D39
  • locus tag: SPD_RS08120 [old locus tag: SPD_1527 ]
  • pan locus tag?: PNEUPAN003121000
  • symbol: SPD_RS08120
  • pan gene symbol?: qsrB
  • synonym:
  • product: ABC transporter permease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPD_RS08120 [old locus tag: SPD_1527 ]
  • symbol: SPD_RS08120
  • product: ABC transporter permease
  • replicon: chromosome
  • strand: -
  • coordinates: 1548665..1549864
  • length: 1200
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_008533 (1548665..1549864) NCBI
  • BioCyc: G1G6V-1661 BioCyc
  • MicrobesOnline: see SPD_1527
  • PneumoBrowse for strain D39V: SPV_1527 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGAGAAATATGTGGGTTGTAATCAAGGAAACCTATCTTCGACATGTCGAGTCATGGAGT
    TTCTTCTTTATGGTGATTTCGCCGTTCCTCTTTTTAGGAATCTCTGTAGGAATTGGGCAT
    ATCCAAGGTTCTTCTATGGCTAAAAATAATAAAGTGGCAGTAGTGACAACAGTGCCATCT
    GTAGCAGAAGGACTGAAGAATGTAAATGGTGTTAACTTCGACTATAAAGACGAAGCAAGT
    GCCAAAGAAGCAATTAAAGAAGAAAAATTAAAAGGTTATTTGACCATTGATCAAGAAGAT
    AGTGTTCTAAAGGCAGTTTATCATGGCGAAACATCGCTTGAAAATGGAATTAAATTTGAG
    GTTACAGGTACACTCAATGAACTGCAAAATCAGCTTAATCGTTCAACTGCTTCCTTGTCT
    CAAGAGCAGGAAAAACGCTTAGCGCAGACAATTCAATTCACAGAAAAGATTGATGAAGCC
    AAGGAAAATAAAAAGTTTATTCAAACAATTGCAGCAGGTGCCTTAGGATTCTTTCTTTAT
    ATGATTCTGATTACCTATGCGGGTGTAACAGCTCAGGAAGTTGCCAGTGAAAAAGGCACC
    AAAATTATGGAAGTCGTTTTTTCTAGCATAAGGGCAAGTCACTATTTCTATGCGCGGATG
    ATGGCTCTGTTTCTAGTGATTTTAACGCATATTGGGATCTATGTTGTAGGTGGTCTGGCT
    GCCGTTTTGCTCTTTAAAGATTTGCCATTCTTGGCTCAGTCTGGTATTTTGGATCACTTG
    GGAGATGCTATCTCACTGAATACCTTGCTCTTTATTTTGATCAGTCTTTTCATGTACGTA
    GTTTTGGCAGCCTTCCTAGGATCTATGGTTTCTCGTCCTGAGGACTCAGGGAAAGCCTTG
    TCGCCTTTGATGATTTTGATTATGGGTGGTTTTTTTGGAGTGACAGCTCTAGGTGCAGCT
    GGTGACAATCTCCTCTTGAAGATTGGTTCTTATATTCCCTTTATTTCGACCTTCTTTATG
    CTGTTTCGAACGATTAATGACTATGCGGGGGGAGCAGAAGCATGGATTTCACTTGCTATT
    ACAGTGATTTTTGCGGTGGTAGCAACAGGATTTATCGGACGCATGTATGCTAGTCTCGTT
    CTTCAAACGGATGATTTAGGGATTTGGAAAACCTTTAAACGTGCCTTATCTTATAAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPD_RS08120 [old locus tag: SPD_1527 ]
  • symbol: SPD_RS08120
  • description: ABC transporter permease
  • length: 399
  • theoretical pI: 7.18138
  • theoretical MW: 43952.1
  • GRAVY: 0.438095

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SPD_1527
  • PFAM:
    ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 145.6)
    and 4 more
    no clan defined XhlA; Haemolysin XhlA (PF10779; HMM-score: 13.7)
    COX4; Cytochrome c oxidase subunit IV (PF02936; HMM-score: 13)
    Met_repress (CL0057) CcdA; Post-segregation antitoxin CcdA (PF07362; HMM-score: 12)
    no clan defined DUF4079; Protein of unknown function (DUF4079) (PF13301; HMM-score: 7.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 7
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.32943
    • TAT(Tat/SPI): 0.006115
    • LIPO(Sec/SPII): 0.024366
  • predicted transmembrane helices (TMHMM): 7

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MRNMWVVIKETYLRHVESWSFFFMVISPFLFLGISVGIGHIQGSSMAKNNKVAVVTTVPSVAEGLKNVNGVNFDYKDEASAKEAIKEEKLKGYLTIDQEDSVLKAVYHGETSLENGIKFEVTGTLNELQNQLNRSTASLSQEQEKRLAQTIQFTEKIDEAKENKKFIQTIAAGALGFFLYMILITYAGVTAQEVASEKGTKIMEVVFSSIRASHYFYARMMALFLVILTHIGIYVVGGLAAVLLFKDLPFLAQSGILDHLGDAISLNTLLFILISLFMYVVLAAFLGSMVSRPEDSGKALSPLMILIMGGFFGVTALGAAGDNLLLKIGSYIPFISTFFMLFRTINDYAGGAEAWISLAITVIFAVVATGFIGRMYASLVLQTDDLGIWKTFKRALSYK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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