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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 21-MAR-2025
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae D39
- locus tag: SPD_RS09225 [old locus tag: SPD_1734 ]
- pan locus tag?: PNEUPAN003548000
- symbol: SPD_RS09225
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPD_RS09225 [old locus tag: SPD_1734 ]
- symbol: SPD_RS09225
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1726716..1727510
- length: 795
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_008533 (1726716..1727510) NCBI
- BioCyc: G1G6V-1886 BioCyc
- MicrobesOnline: see SPD_1734
- PneumoBrowse for strain D39V: SPV_2416 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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781ATGAATGTCAAAAAGATAATGTCAATTTTTCAATCCTTTTATGTTGATGTCAGTATTGAG
GAACTGACTTTGACTTTACCAATCAGTTTTGTAAAAAGGTTTGAGTATACTCAAATGACT
TTTCATAAGGAATCATTTTTATTGATTAAAGAAAAGAGAAGGGGGAGTTTGAGTTCATTT
GTTACTCAGGCTCGCACTATGGGTGAAAAAGCCAATATGGATGTTGTTTTGGTGTTTTCG
AAGTTATCAGACAGTGAAAAAAAGCAATTACTTCAAGCTAGAGTTCCGTTTGTAGACTTT
AAGGGAAACCTCTTCTTCCCTCCATTGGGACTAGTACTCAATGCGAATGATACTGAAGTC
CCTAAGGAATTAACACCTAGCGAACAATTAACGTGGATTGCCTTTTTATTGACAAAAGGT
CAAAAAGTAGTAGATGTTGATTTGCTTTCACAAGTCACTGGACTTCCAAACTCAACAATT
TATAGGTGTTTGAGGACTTTTAAAGCTTTATATTGGTTAAACAAGCAAAATAAGCTTTAC
ACATATACGGTGTCAAAGAAAGAATTATTCTTAAAATCCGTGTCATGTTTATTTAATCCC
ATCAAAAAACGGATTTTATTGCCAGATGGCGATATAAAGCAGATAAAATCTGTTTCTAAC
CTTCTATATGGTGGTGCTTATGCTTTGTCGCATTCAACTTTTTTAGCTGAAACGGATGAA
AATATTAGCTATGTCATATGGCAGAGAAAATTCAATCAGTTATCCTTGCCACTTTCTCAG
CATGTTTTAAAATGA60
120
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795
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPD_RS09225 [old locus tag: SPD_1734 ]
- symbol: SPD_RS09225
- description: hypothetical protein
- length: 264
- theoretical pI: 10.1159
- theoretical MW: 30356.3
- GRAVY: -0.0469697
⊟Function[edit | edit source]
- TIGRFAM: Regulatory functions DNA interactions beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family (TIGR02431; HMM-score: 11.8)
- TheSEED: see SPD_1734
- PFAM: HTH (CL0123) HTH_IclR; IclR helix-turn-helix domain (PF09339; HMM-score: 17.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.32
- Cytoplasmic Membrane Score: 9.55
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.5772
- Cytoplasmic Membrane Score: 0.3672
- Cell wall & surface Score: 0.0014
- Extracellular Score: 0.0541
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002641
- TAT(Tat/SPI): 0.001318
- LIPO(Sec/SPII): 0.000563
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNVKKIMSIFQSFYVDVSIEELTLTLPISFVKRFEYTQMTFHKESFLLIKEKRRGSLSSFVTQARTMGEKANMDVVLVFSKLSDSEKKQLLQARVPFVDFKGNLFFPPLGLVLNANDTEVPKELTPSEQLTWIAFLLTKGQKVVDVDLLSQVTGLPNSTIYRCLRTFKALYWLNKQNKLYTYTVSKKELFLKSVSCLFNPIKKRILLPDGDIKQIKSVSNLLYGGAYALSHSTFLAETDENISYVIWQRKFNQLSLPLSQHVLK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_2416 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]