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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae G54
  • locus tag: SPG_0431 [new locus tag: SPG_RS02185 ]
  • pan locus tag?: PNEUPAN001355000
  • symbol: SPG_0431
  • pan gene symbol?: —
  • synonym:
  • product: conserved hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPG_0431 [new locus tag: SPG_RS02185 ]
  • symbol: SPG_0431
  • product: conserved hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 420288..421928
  • length: 1641
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGTTTCATGAATTTGGGGTTGTGTATACTAGACCAGGGCGCAGACATGACTTTGTTCCA
    GAGTTACGATTTGAAGATTTTTTAGATAAACAGCTATCTATAGATGAAACAGCCAGTTAC
    TATCATAGGGGAGTATGTATAGAGGGAGCGGATTCATTTGAAAATATACTAGATTTCATT
    GATTGGCTACCTAAGATTGGGATGAACAGTTTTTTCATCCAGTTTGAAAATCCTTACTCT
    TTTTTGAAACGTTGGTATGAACATGAATTTAATCCATATCTAAATAAAGAACAATTTTCA
    AATGAATTAGTACAAGAATTGAGTGATAGGTTGGATAAAGAATTGCAAAAAAGAGGTCTT
    ATTCATCATCGTGTTGGTCATGGATGGACAGGTGAAGTTTTAGGTTACTNTTCAAAATTT
    GGCTGGGAATCAGGTCTTAGTATTTCAGAGGAGAAGAAACCCTATGTCGCTGAAATAAAC
    GGGAAACGAGAATTGTTTAATACGGCTCCGATTTTAACCAGCCTGGATTTTTCAAATCCA
    GATGTAGCTGATAAGATGGTAGAAATTATCAAGGATTATGCCAAGAAAAGACCTGATGTT
    AACTACTTACATGTATGGTTGTCGGATGCTCGTAATAATATTTGTGAATGCGAAAACTGT
    AGACAAGAATTGGTTTCGGATCAGTATATTCGTATTCTCAATCAATTGGATAGGGCTTTA
    ACGAGTGAGGGATTAGATACAAAGATTTGTTTTNTGCTTTATCATGAGTTGTTATGGGCA
    CCTCAGAAAGAAAAATTAGATAATCCTGAACGCTTTACCATGATGTTTGCACCGATTACA
    AGAACATTTGAAATGAGTTATGCAGATGTAGATTTTGACAATTCCATACCTACGCCTAAA
    CCTTATATGCGTAATAAAATTATACTTCCGAATTCTCTTGAGGAAAATTTATCTTATCTT
    TTTGAGTGGCAAAAAGCATTTAAAGGAGATAGTTTCGTATATGACTATCCTTTAGGGCGT
    GCTCATTATGGCGATTTAGGCTATATGAAAATTAGTCAAACTATTTACAGAGATGTATCT
    TATCTTTCCAACCTACATTTGAACGGGTACATTTCGTGTCAAGAATTACGTGCCGGATTC
    CCTCATAATTTTCCTAATTATGTCATGGGGGAAATGCTCTGGAAGAAGACAAGAAGTTAT
    GAAGAATTGATTGAAGAATACTTTTCTGCTTTGTATGGGGAAAATTGGCAGTCTGTTGTT
    GAATATTTAGAAAAATTATCCATTTATTCCTCTTGTGATTATTTTAATGCAATTGGCAGC
    CGTCAAAGTGATGTTTTAGCGAATCATTATTATATAGCTTACAATCTAGCTGATAATTTT
    TTACCAATTATTGAGGAAAATATTTCTAAGTTATTAAATAGTCAAAAGGATGAATGGAAA
    CAGCTCAGTTATCATCGTGAATATGTTGTTAAGATGGCGAAGGCTTTATATCTTCAAGCA
    ACTGGAAAAACAAGGCAAGCTCAAGATGAATGGAGAAATGTGTTGAATTATATCCGTGGG
    CACGAATTGCTATTTCAATCTAATTTGGATGTTTATCGTGTAATTGAAGTAGCAAAAAAT
    TACGCTGGTTTCCACTTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1641

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPG_0431 [new locus tag: SPG_RS02185 ]
  • symbol: SPG_0431
  • description: conserved hypothetical protein
  • length: 546
  • theoretical pI: 5.30728
  • theoretical MW: 64333.2
  • GRAVY: -0.502022

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG01114224: hypothetical protein
  • PFAM:
    Glyco_hydro_tim (CL0058) DUF4838; Domain of unknown function (DUF4838) (PF16126; HMM-score: 74.4)
    and 4 more
    UBA (CL0214) Ubiq-assoc; Ubiquitin-associated (PF09145; HMM-score: 12.7)
    no clan defined Fur_reg_FbpB; Fur-regulated basic protein B (PF13040; HMM-score: 11.6)
    NADP_Rossmann (CL0063) Methyltransf_30; S-adenosyl-L-methionine-dependent methyltransferase (PF05430; HMM-score: 11.5)
    no clan defined SPATA1_C; Spermatogenesis-associated C-terminus (PF15743; HMM-score: 11.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001842
    • TAT(Tat/SPI): 0.000214
    • LIPO(Sec/SPII): 0.000368
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACF56194 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MFHEFGVVYTRPGRRHDFVPELRFEDFLDKQLSIDETASYYHRGVCIEGADSFENILDFIDWLPKIGMNSFFIQFENPYSFLKRWYEHEFNPYLNKEQFSNELVQELSDRLDKELQKRGLIHHRVGHGWTGEVLGYXSKFGWESGLSISEEKKPYVAEINGKRELFNTAPILTSLDFSNPDVADKMVEIIKDYAKKRPDVNYLHVWLSDARNNICECENCRQELVSDQYIRILNQLDRALTSEGLDTKICFXLYHELLWAPQKEKLDNPERFTMMFAPITRTFEMSYADVDFDNSIPTPKPYMRNKIILPNSLEENLSYLFEWQKAFKGDSFVYDYPLGRAHYGDLGYMKISQTIYRDVSYLSNLHLNGYISCQELRAGFPHNFPNYVMGEMLWKKTRSYEELIEEYFSALYGENWQSVVEYLEKLSIYSSCDYFNAIGSRQSDVLANHYYIAYNLADNFLPIIEENISKLLNSQKDEWKQLSYHREYVVKMAKALYLQATGKTRQAQDEWRNVLNYIRGHELLFQSNLDVYRVIEVAKNYAGFHL

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulators: XylR* (repression) regulon, CcpA* regulon
    XylR*(TF)important in Cellobiose utilization; RegPrecise    transcription unit transferred from TIGR4 data RegPrecise 
    CcpA*(TF)important in Global catabolite repression; RegPrecise    transcription unit transferred from TIGR4 data RegPrecise 

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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