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serotype 4
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serotype 2
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serotype 19A
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serotype 19F
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serotype 6B
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70585
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serotype 23F
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serotype 19A
Hu17
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INV104
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INV200
serotype 14
JJA
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MDRSPN001
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NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
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SP49
serotype 19A
SPN032672
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serotype 3
SPN034183
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SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
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TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae G54
  • locus tag: SPG_0620 [new locus tag: SPG_RS03145 ]
  • pan locus tag?: PNEUPAN001595000
  • symbol: SPG_0620
  • pan gene symbol?: —
  • synonym:
  • product: conserved hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPG_0620 [new locus tag: SPG_RS03145 ]
  • symbol: SPG_0620
  • product: conserved hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 613836..614063
  • length: 228
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    ATGAAAGAAAAGAAGAAAAATCCACTTTTTGTGGGTATCTTGTCGATTATTCTTGGTTTG
    TTATTTCCAATTGTAGGCCTGATTTTGGGTATCATAGGATTGGTCTTAGCTATTTCATAC
    CAAAAAGAGTCACAATTAGACTATAAAATAGAAAAGATTCTTAATATCTTAGGAATTGTG
    ATTTCTGTAGTTAACTGGATTGTAGCAATCGCCTTAATTTTTCGATAA
    60
    120
    180
    228

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPG_0620 [new locus tag: SPG_RS03145 ]
  • symbol: SPG_0620
  • description: conserved hypothetical protein
  • length: 75
  • theoretical pI: 10.3255
  • theoretical MW: 8331.29
  • GRAVY: 1.212

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG01114191: hypothetical protein
  • PFAM:
    no clan defined MpPF26; M penetrans paralogue family 26 (PF07666; HMM-score: 40.6)
    and 10 more
    DUF4190; Domain of unknown function (DUF4190) (PF13828; HMM-score: 17.5)
    DHHC; DHHC palmitoyltransferase (PF01529; HMM-score: 14.7)
    DUF3671; Protein of unknown function (PF12420; HMM-score: 14.4)
    Tetraspannin (CL0347) DUF4064; Protein of unknown function (DUF4064) (PF13273; HMM-score: 12.8)
    no clan defined TctB; Tripartite tricarboxylate transporter TctB family (PF07331; HMM-score: 12.6)
    TMEM43; Transmembrane protein 43 (PF07787; HMM-score: 9.3)
    Phage_holin_3_6; Putative Actinobacterial Holin-X, holin superfamily III (PF07332; HMM-score: 9.1)
    Tetraspannin (CL0347) Tetraspanin; Tetraspanin family (PF00335; HMM-score: 8.1)
    Holin-II (CL0563) Phage_holin_2_3; Bacteriophage holin family HP1 (PF16080; HMM-score: 6.5)
    no clan defined DUF2207; Predicted membrane protein (DUF2207) (PF09972; HMM-score: 5.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 2
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0002
    • Cytoplasmic Membrane Score: 0.7536
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.246
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004813
    • TAT(Tat/SPI): 0.000247
    • LIPO(Sec/SPII): 0.00649
  • predicted transmembrane helices (TMHMM): 2

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACF56249 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKEKKKNPLFVGILSIILGLLFPIVGLILGIIGLVLAISYQKESQLDYKIEKILNILGIVISVVNWIVAIALIFR

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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