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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 30-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae G54
- locus tag: SPG_1279 [new locus tag: SPG_RS06395 ]
- pan locus tag?: PNEUPAN002058000
- symbol: SPG_1279
- pan gene symbol?: —
- synonym:
- product: Tn5253 conserved hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPG_1279 [new locus tag: SPG_RS06395 ]
- symbol: SPG_1279
- product: Tn5253 conserved hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1246132..1246374
- length: 243
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP001015 (1246132..1246374) NCBI
- BioCyc: see SPG_RS06395
- MicrobesOnline: 5756548 MicrobesOnline
- PneumoBrowse for strain D39V:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241ATGTTTACGCATTTTAAAGGTTTTGTTTATGGAGTAGACGCAAGTGCTATGTTTGCACAA
GCTATGTCTTTGTTACAGAAGGGATTGATTGCCGTTGGTGCCTTTCTCGTTGTTGTGGGG
ATTGTCAATCTTGCAACCAACATTAAAGATGGAGGACCAGGTGTTCGGAATGCCATTCTT
GAAATTGTCGGTGGAGTTATGGTCGGGGCTGCTGGAGCCTTTGTAACCCAGATTTCAATT
TAG60
120
180
240
243
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPG_1279 [new locus tag: SPG_RS06395 ]
- symbol: SPG_1279
- description: Tn5253 conserved hypothetical protein
- length: 80
- theoretical pI: 9.22195
- theoretical MW: 8141.64
- GRAVY: 1.0725
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- FIG01114970: hypothetical protein
- PFAM: TrbC_VirB2 (CL0690) Maff2; Maff2 family (PF12750; HMM-score: 20.3)and 4 moreDUF4134; Domain of unknown function (DUF4134) (PF13572; HMM-score: 14.8)no clan defined DUF2157; Predicted membrane protein (DUF2157) (PF09925; HMM-score: 13.4)DUF3725; Protein of unknown function (DUF3725) (PF12523; HMM-score: 13.1)MAP17; Membrane-associated protein 117 kDa, PDZK1-interacting protein 1 (PF15807; HMM-score: 11.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 2
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0.0016
- Cytoplasmic Membrane Score: 0.3699
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.6284
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.017989
- TAT(Tat/SPI): 0.001219
- LIPO(Sec/SPII): 0.003602
- predicted transmembrane helices (TMHMM): 2
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: ACF55598 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MFTHFKGFVYGVDASAMFAQAMSLLQKGLIAVGAFLVVVGIVNLATNIKDGGPGVRNAILEIVGGVMVGAAGAFVTQISI
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V:
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]