From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 10-NOV-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae G54
  • locus tag: SPG_RS03935 [old locus tag: SPG_0779 ]
  • pan locus tag?: PNEUPAN001836000
  • symbol: SPG_RS03935
  • pan gene symbol?: —
  • synonym:
  • product: DUF979 family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPG_RS03935 [old locus tag: SPG_0779 ]
  • symbol: SPG_RS03935
  • product: DUF979 family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 755911..756834
  • length: 924
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGACAGAGTTGGCAAAGCAACTATTAGAGTTGACCTATATTGTGATTGGTTGTCAATTT
    CTCCATACAGCCTATTGTAGTTATAAAGATAAAACAAACCCAGTTCGACTTGGGACATCT
    GCATTTTGGACTCTATTGTCTATTACGTTTATAGGTGGTTCCTATATGCCAAATATGAGT
    ATTGGTATTATTGTAATCCTATTATCGCTGTTAACATTGTTTAAGCAAGTCCGTATCGGA
    ACCTTGCCATCCTTAGATGAAATGAAAGCCAATATTGAATCTAACAGGTTGAAAAATAAA
    ATTTTTATTCCAGTTATGCTGATGGCAATACTTGCGTTGGTCTTAGCGCAAATGATTCCA
    GAATTTAGCAAGATTTCGATTAGCCTTGCCGCCTTGTTTGCTACAATTTCTGTTCTTGTG
    ATTACCAATAGTCACCCTAAGAGTCTGTTATCAGAAAATAATCGAATGACTCAGCAAGTT
    TCAACAAGTGGGATTGTTCCTCAATTATTAGGGGCTTTGGGGGCTATTTTTACTGTAGCA
    GGTGTTGGTGATGTTATTTCTCATCTGATTAGCGGTATTGTTCCTTCAGATAGTCGCTTT
    ATAGGAGTTTTGGCCTATGTTCTTGGAATGGTTCTATTCACAATGATTATGGGAAATGCT
    TTTGCAGCATTCACCGTTATTACAGCAGGTGTTGGAGTTCCCTTTGTATTTGCTCTGGGA
    GCTAATCCAATTGTGGCTGGTGCTCTTGCCATGACAGCAGGTTATTGTGGGACCTTATTG
    ACCCCAATGGCTGCTAATTTTAACGCTNTACCAGCAGCATTGATGGATATGAAAGATCAG
    AATGGCGTTATAAAGGCTCAAGCAGGTGTTGCTCTAGTAATGATTGTTATTCACATATTC
    TTAATGTACTTTCTCGCATTTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    924

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPG_RS03935 [old locus tag: SPG_0779 ]
  • symbol: SPG_RS03935
  • description: DUF979 family protein
  • length: 307
  • theoretical pI: 9.09971
  • theoretical MW: 32662
  • GRAVY: 0.927778

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SPG_0779
  • PFAM:
    no clan defined DUF979; Protein of unknown function (DUF979) (PF06166; HMM-score: 374.9)
    and 3 more
    DUF1673; Protein of unknown function (DUF1673) (PF07895; HMM-score: 8.2)
    SLATT (CL0676) SLATT_1; SMODS and SLOG-associating 2TM effector domain 1 (PF18181; HMM-score: 7.3)
    no clan defined DUF2157; Predicted membrane protein (DUF2157) (PF09925; HMM-score: 6.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 9
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.025669
    • TAT(Tat/SPI): 0.007449
    • LIPO(Sec/SPII): 0.397495
  • predicted transmembrane helices (TMHMM): 8

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000137267 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MTELAKQLLELTYIVIGCQFLHTAYCSYKDKTNPVRLGTSAFWTLLSITFIGGSYMPNMSIGIIVILLSLLTLFKQVRIGTLPSLDEMKANIESNRLKNKIFIPVMLMAILALVLAQMIPEFSKISISLAALFATISVLVITNSHPKSLLSENNRMTQQVSTSGIVPQLLGALGAIFTVAGVGDVISHLISGIVPSDSRFIGVLAYVLGMVLFTMIMGNAFAAFTVITAGVGVPFVFALGANPIVAGALAMTAGYCGTLLTPMAANFNAXPAALMDMKDQNGVIKAQAGVALVMIVIHIFLMYFLAF

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPG_RS03935&oldid=71629"