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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 24-APR-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae G54
- locus tag: SPG_RS06360 [old locus tag: SPG_1272 ]
- pan locus tag?: PNEUPAN002181000
- symbol: SPG_RS06360
- pan gene symbol?: —
- synonym:
- product: DEAD/DEAH box helicase family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPG_RS06360 [old locus tag: SPG_1272 ]
- symbol: SPG_RS06360
- product: DEAD/DEAH box helicase family protein
- replicon: chromosome
- strand: -
- coordinates: 1232076..1238300
- length: 6225
- essential: unknown
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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181
241
301
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421
481
541
601
661
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901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
2401
2461
2521
2581
2641
2701
2761
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3001
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3121
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5941
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6061
6121
6181ATGGAAGTAATACAATTATTGGCTATGTTTCGTGGAACAATTCCAAAAGATAGGGATAAA
ATGGACCTATTTCTTCGCTATCAGGCGCAACATTTTGATGAGAAATGGCAGGACTTGGTA
GAGAGTTTTTTGACTGAAGAGGAGAAGATAGAAGAGATACCTCATGTCTATTCGTTTCAT
CAAGACATTGTTTCTTTCCTAGAGGCCAGTTCTGAAAATAATGACCAAGATCTAGAAAGT
TACACAAGAAATTTTGGACAAGCAGGACTAGATAAATTATCTCAATTAAGTAATTTTGAG
AAAAATTTGGTGCTAAAAGTCGCAAGCTATAACCTTTCCACTCGATTTTACATCCAATCT
GAAAAAGAGAAACTAACACCATTAAGTGAGCTTGTATTTCATCAGAATCAGGATGTTAAT
TTAGTCAATGTCTATCGGGTTGCGAATAATCTATCTGACCGTATTAGTAGAGATATAGAG
GAATTTCTTCTAATGGTTGACTCAAAAGAGGTTAAAAAAGAAGTTCCTGAGATTCATTTT
GAAGAAAAAGAGGGAGATGTTCTAGCCTATTTGGGTTCAGAATTGATGGCTACTTTAGAT
ATCGTTACGGATCTTGTCCATCATGAAGAAAACTACATACAACTCCCACTGACACAAAAG
CTGAAGATTATTACTCATTTTGATGAAGTAAAAGCTAAAAGCGAAAAGTCTAATCAAGTA
GAGAAAATTTTATCTCCTTCAAGTGATATTGAACAGGAAACGGAAGAAACTAACTCCTTT
TCTAATGTCGATAAAATTGTAGAAGAAGCTTTGAGGGAATATCCAATCGGTTCACAAGTA
AGTTATAAAGGACAAGTATTTCAGTTGGTTTCGATTGAAAATGCGCAGTTAAATGACTTA
GTTCGCCTAGAGCTATTCAATGATTCCAACCAGTTATTTGAAGAGAATCCTATCTTATAC
TTGAACAGTTTGGAAGAGATTGAACAAGTATTGTCTCATTTAGAACTTGAAAAAGAAGAT
TCAGAGATTGAGATTGATTCATCAAGTGAAAGTCAGGAAATAGATTTGTTTTCATACCTG
GAAGAAGAAAATGTAAATGAAAAGGATAAGGATAAGGAAACAAAATCTTTAATTTCAGGT
ATAGAAGAGACGGATGTCCCTGTTCTAGATTTTGTTTTTCCAGATGATTTAGAGGACTTT
TATCCTAAGACAAATCGAGAAAAGATTGAAACGAATATCGCCGCAATTGAACTTGTTAAA
AGATTAGAAAAAGAGAGACGACAAGCGAATCCAGAAGAACAAGAGCTACTCGCCAAGTAT
GTCGGCTGGGGCGGTCTTGCCAATGAATTTTTCGATGAACTCAATCCAAAGTATGAAACA
GAACGTTTAACTCTTAAGAGCTTAGTAAGTAAATCAGAATACTCGACCATAAAACAAAGT
TCTCTCACAGCCTATTATACAGACCCAATGATTATTCGCCAGATTTGGCAAAAATTACTG
GATGATGGTTTTGAGGGAGGAAGGATATTAGATCCTTCTATGGGGACTGGGAACTTCTTT
GCGGCGATGCCTAGAAGTATACGAGAGAAATCAGAACTCTATGGGGTTGAATTAGACAGT
GTGACTGGTGCAATCGCAAAACAACTCCACCCCAATACCCATATTGAAGTGCGAGGATTT
GAAGAAGTTCCCTATCAAAATAATAGTTTTGATTTAGTCTTAACGAATGTTCCTTTTGGA
AATTTTCGCATTGCCGATAAAAACTATGATAAACCTTATATGATTCATGATTACTTTGTC
AAACACTCACTTGATTTAGTAAGAGACGGAGGACAAGTGTCGATTATCTCATCTATTGGG
ACAATGGATAAGCGGACAGATAATGTCTTACAAGAGATTAAATCCAATACTCATTTTTTA
GGGGGAGTTCGGTTGCCGGATACGGCTTTTAAAAAGATTGCAGGTACCCGAGTGACCACA
GATCTCCTATTCTTTCAAAAGGATCAAGCAAAGAATCTTAATGAGGAGGAACTTGTCTTT
AGTGGCTCTGTTCCCTTTGAGGAGGATAAGCGTGTCTGGATCAATCCTTATTTTGATGGG
AAATACAATACACAAGTTTTGGGTGAATATGAGGTACGTAATTTTAATGGAGGAACCCTC
AATGTTAAGGGGGAATCAGAAACATTAGCTACTGACATAATGAAAGCATTAGAGAATGTA
GAAGCACCTAAACAAATTGACAATTCTTTGAAAGCACCTGTTTTTATCCAAGAAGAAGTG
GATAATTCTATCCCAAGTCATATACGTGAGAACTTAGCGCTCTATTCTTTTGGATATGAG
GGAAATCAAATTTATTATCGAGATACGCATGGCATTCGGAGAAGTTCAAAAGTAGACGAA
ATTAGTTATTATGTAGATGAGAAGGGAGATTTTAAAGCTTGGGACAGTTCCTTGTCTGAA
CATAAAATAGATCGATTCGTGCAACTTCATTTGACAGATGAGGAAGCACTAGATGTATAC
AAGTCAGAAGAAGCGAGTAAAAGAGGGAAATATAAGGGCTTGTTCAAAAAAACGGTCTTT
TATGAAAGCCCCTTATCGGATAAGGATATTAGTCGCATTAAGGGCATGGTTGATTTGAGA
GAGACCTATCAAGCCTTAATTGAAATTCAACGCCATCCAGATTATAGTCGGACAGATTTT
CAGGTATTACTTAGTAAACTCAATCGTGACTATGATCGGTTTGTAAGCCAATTTGGATAC
TTGAATGTCTCAGTCAATCGAAACTTATTTGATAGTGACGATAAGTATTCTTTACTAGCA
AGTTTAGAAGATGAATACATTGATTCTAAAGATCAGAAAGTAAAATATAAAAAATCTTTA
GCCTTTGAGAAAGCATTGGTTAGGCCGGAGAGAGTGATTACAAGAGTTTCAACGGCTTTA
GATGCCTTAAACTCCAGTTTATCAGATGGTAGAGGGGTTGATATAGACTTTATGGTATCA
ATTTACCCTGAACATAGCCAAGCAGCTATTTTAGATGAGTTGGGTGACCAGATCTTAATG
GATCCAGAAAGCTATTTAAGAGGGGAAAGAAATTATCTTTCTAAGAACCAGTTTTTGTCA
GGAGATATTCTCAACAAGATAGAAGTAGTTCAACTATTAGTAGAGGAAAACAACCAAGAA
TGTGATTGGACTCATGCGTTAGATTTGTTAGAATCTGTTCGCCCTCCAAGGATTCATCTG
GCAGATATTGAGTTTAAAATAGGGTCACGTTGGATTCCTCAATCCGTTTATGGTAAATTT
GCCTTTGAATGTTTTACCAACCGTGAATTTGAATTGTCTTCGCCTGATGTTGAACAAGTC
ATTGAAGTGAATCCTGTCGATGGGCAGGTTCATTTAAGGACACCATTTGCTTATCGCTAT
CCAAGTGCCAAAGATAGTAGTCTTGGAGTCAGTGGCTCACGTTATGATACAGGAAGAAAG
ATTTTTGAGAATTTACTTAATTCGAACCAACCGACTATTACTATGACTGTTACGGAAGGG
GAAAAGAAAAAGACCATCACAGATTTGGAAAAAACCTCTGTTCTAAGAGCAAAAGAGCAG
CATTTACAAGAACTCTTTCAAGACTTTGTCTCACGGTATCCAGAAGTTCAACAAGTCATT
GAAGAAAGTTATAATCGTCTTTATAATCGAACGGTTAGTCGAGAGTATGACGGTAGCCAT
TTAGTCATTGATGGCTTGGCACAAAACATCAGTCTTCGTCCTCATCAAGAGAATGCCATT
CAAAGAATTGTAGAAGAAAAAAGAGCCTTGTTAGCTCATGAGGTAGGTTCAGGAAAGACC
TTGACCATGCTTGGTGCTGGCTTTAAATTAAAGGAGTTGGGGATGGTTCATAAGCCCTTG
TATGTGGTGCCCTCTAGTTTGTCTGCTCAGTTTGGCCAAGAAATCATGAAATTTTTCCCT
ACTAAAAAAGTCTTTGTGACCACTAAGAAAGATTTTGTGAAGGCAAGAAGAAAACAGTTT
GTGTCACGTATTATTACAGGAGATTACGATGCCATTGTCATTGGGGATTCTCAATTTGAA
AAAATCCCTGTCAGTAAGGAAAGACAGATGAATTATATCGAGGATAAACTCAATGAACTA
CGAGAGATTAAAACACATTCTGAAAATAAGTACACCGTTAAAGAAGCAGAGCAATCAATA
AGTGGTCTTGAGAAACAATTGGAAGAACTCCAACGCTTTAATCGTGATAGTTTTATTGAT
TTTGAGAACTTAGGAATTGATTTTCTCTTTGTGGATGAAGCACATCACTTTAAAAATATA
CGTCCAATTACTGGACTTGGAAATGTAGCAGGGATTACCAATACAACGTCTAAGAAGAAT
GTGGATATGGAAATGAAGGTTCGACAGATTCAGGAAGAACATGATTTTAAAAATATTGTC
TTTGCGACAGGAACACCTGTTTCAAATTCAATTAGTGAGCTGTATACTATGATGAACTAC
ATTCAACCGGATATCTTAAAACGCTATCAAGTTGATTATTTTGACTCTTGGGTAGGTGCT
TTTGGAGAAATTCAAAACTCTATGGAATTAGCTCCTACAGGGGATAAGTACCAGCCTAAG
AAACGATTTAAAAAGTTTGTCAATCTACCTGAGTTGATGAAAATCTATAAAGAAACAGCC
GACATTCAAACACAAGATATGTTGGATTTACCTGTACCAGAAGCCCATATTATCCCTATT
GAGAGTGAGTTAACTGAAAACCAGAAACTCTATCTAGAAGAATTGGTTATGAGATCAGAT
GCGGTCAAATGTGGAACAGTTGATCCAAGTCAGGATAACATGTTAAAAATTACGGGTGAG
GCACGAAAATTAGCTATTGATATGCGTTTATTGGACTCTAGTTATAGTCTAGCAGACAAT
CATAAACTGCTTCAGGTAGTGGATAATGTTGAAAGAATTTATCGTGAGGGAATGGAAAAT
AAGGCTACTCAGATGATTTTTTCAGATATTGGCACACCTAAGAAAAAAGATAATGGCTTT
GATGTTTATTCTGAGATTAAGGCTTTATTAGTTGATAGAGGAATCCCTAGTATGGAAATT
GCCTTTGTACATGATGCCAATAGTGATGAAAAGAAGAATAGCTTGTCTCGAAAGGTTAAT
GCAGGAGAGGTTCGGGTTCTTCTTGCCTCAACTGAAAAAGGAGGAACAGGTTTAAATGTT
CAGAGCAAGATGAAAGCAGTTCACCATCTGGATGTACCGTGGAGACCAAGTGACATTCAG
CAACGTAATGGACGTATTATCCGACAGGGAAATGAAAACAAGGAAGTGGATATTTACCAC
TATATTACCAAAGGTTCGTTTGATAATTATCTATGGGCAACTCAGGAGAACAAACTCCGT
TATATTAAGCAGATTATGACTTCTAAGGAGCCGATTCGTGCTGCGGAAGATATTGATGAA
CAGACTATGACAGCTTCTGATTTTAAGGCACTAGCAACAGGTAATCCTTATCTCAAATAT
AAGATGGAACTAGAGAATGATCTAACTCTATTAGAAAATCAAAGACGCGCCTTTCAACGC
AGCAAGGATCACTATCGTCATACAATCTCTTACTGTGAAGAAAATATGCCCATTCTTGAG
AAACGATTAAGCAAGTATGAAGGCGACATTCAACAGTCTGAAATGTCGAAAGACCAATCA
TTTTCTATGACGATAGGTAAACAAGTTTTTGAGCAACGAGCTGAAGCAGGTGAATCCCTA
CACCGTCTTATCCGTCATAATCAATCTGACAGCAAAGAATTTCGAACCCTAGCAAGTTAT
CGAGGATTTGACATTAAAATGCTTAGTCTTGCAACAAATCAACCTCTTCCTGAAACCTTC
TCTGTTAAGATTGTAGGAGAAAACCAATATTCTGTCAGTTTAGATTTGTATTCTCCTTTG
GGGACAATTCAAAGGCTTCAGCATACGATAGACCACATTAAAGATGACCAAGTGAAAACT
CAGAACTTATTGGATGAATTAAAGGATAAATGGACTACTGCTAAGGTAGAAATTGAGAAA
AATTTTCCAAAGGAAGAGGATTATCAAACTAAAAAGGCCGAATACGATGTACTCGCGCCA
TTGATTGAAACAGAAACGGATTTAGATATTATTGATCAGGCCTTACGACAATTCCACGAA
AAAGGAAAAGAAAAGCAAGAACAACTTTCTTTTGAATTAGATTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPG_RS06360 [old locus tag: SPG_1272 ]
- symbol: SPG_RS06360
- description: DEAD/DEAH box helicase family protein
- length: 2074
- theoretical pI: 4.7833
- theoretical MW: 239334
- GRAVY: -0.591321
⊟Function[edit | edit source]
- TIGRFAM: DNA phosphorothioation system restriction enzyme (TIGR04095; HMM-score: 25.2)and 1 moreDNA metabolism DNA replication, recombination, and repair ATP-dependent DNA helicase, RecQ family (TIGR00614; EC 3.6.4.12; HMM-score: 14.4)
- TheSEED: see SPG_1272
- PFAM: P-loop_NTPase (CL0023) SNF2-rel_dom; SNF2-related domain (PF00176; HMM-score: 44.9)ResIII; Type III restriction enzyme, res subunit (PF04851; HMM-score: 43.8)and 6 moreHelicase_C; Helicase conserved C-terminal domain (PF00271; HMM-score: 33.4)NADP_Rossmann (CL0063) Methyltransf_25; Methyltransferase domain (PF13649; HMM-score: 23.2)Methyltransf_11; Methyltransferase domain (PF08241; HMM-score: 21.5)P-loop_NTPase (CL0023) DEAD; DEAD/DEAH box helicase (PF00270; HMM-score: 19.3)NADP_Rossmann (CL0063) Methyltransf_31; Methyltransferase domain (PF13847; HMM-score: 15.5)no clan defined PX; PX domain (PF00787; HMM-score: 11.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.7053
- Cytoplasmic Membrane Score: 0.0437
- Cell wall & surface Score: 0.0809
- Extracellular Score: 0.1701
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001509
- TAT(Tat/SPI): 0.000088
- LIPO(Sec/SPII): 0.000342
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000452056 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MEVIQLLAMFRGTIPKDRDKMDLFLRYQAQHFDEKWQDLVESFLTEEEKIEEIPHVYSFHQDIVSFLEASSENNDQDLESYTRNFGQAGLDKLSQLSNFEKNLVLKVASYNLSTRFYIQSEKEKLTPLSELVFHQNQDVNLVNVYRVANNLSDRISRDIEEFLLMVDSKEVKKEVPEIHFEEKEGDVLAYLGSELMATLDIVTDLVHHEENYIQLPLTQKLKIITHFDEVKAKSEKSNQVEKILSPSSDIEQETEETNSFSNVDKIVEEALREYPIGSQVSYKGQVFQLVSIENAQLNDLVRLELFNDSNQLFEENPILYLNSLEEIEQVLSHLELEKEDSEIEIDSSSESQEIDLFSYLEEENVNEKDKDKETKSLISGIEETDVPVLDFVFPDDLEDFYPKTNREKIETNIAAIELVKRLEKERRQANPEEQELLAKYVGWGGLANEFFDELNPKYETERLTLKSLVSKSEYSTIKQSSLTAYYTDPMIIRQIWQKLLDDGFEGGRILDPSMGTGNFFAAMPRSIREKSELYGVELDSVTGAIAKQLHPNTHIEVRGFEEVPYQNNSFDLVLTNVPFGNFRIADKNYDKPYMIHDYFVKHSLDLVRDGGQVSIISSIGTMDKRTDNVLQEIKSNTHFLGGVRLPDTAFKKIAGTRVTTDLLFFQKDQAKNLNEEELVFSGSVPFEEDKRVWINPYFDGKYNTQVLGEYEVRNFNGGTLNVKGESETLATDIMKALENVEAPKQIDNSLKAPVFIQEEVDNSIPSHIRENLALYSFGYEGNQIYYRDTHGIRRSSKVDEISYYVDEKGDFKAWDSSLSEHKIDRFVQLHLTDEEALDVYKSEEASKRGKYKGLFKKTVFYESPLSDKDISRIKGMVDLRETYQALIEIQRHPDYSRTDFQVLLSKLNRDYDRFVSQFGYLNVSVNRNLFDSDDKYSLLASLEDEYIDSKDQKVKYKKSLAFEKALVRPERVITRVSTALDALNSSLSDGRGVDIDFMVSIYPEHSQAAILDELGDQILMDPESYLRGERNYLSKNQFLSGDILNKIEVVQLLVEENNQECDWTHALDLLESVRPPRIHLADIEFKIGSRWIPQSVYGKFAFECFTNREFELSSPDVEQVIEVNPVDGQVHLRTPFAYRYPSAKDSSLGVSGSRYDTGRKIFENLLNSNQPTITMTVTEGEKKKTITDLEKTSVLRAKEQHLQELFQDFVSRYPEVQQVIEESYNRLYNRTVSREYDGSHLVIDGLAQNISLRPHQENAIQRIVEEKRALLAHEVGSGKTLTMLGAGFKLKELGMVHKPLYVVPSSLSAQFGQEIMKFFPTKKVFVTTKKDFVKARRKQFVSRIITGDYDAIVIGDSQFEKIPVSKERQMNYIEDKLNELREIKTHSENKYTVKEAEQSISGLEKQLEELQRFNRDSFIDFENLGIDFLFVDEAHHFKNIRPITGLGNVAGITNTTSKKNVDMEMKVRQIQEEHDFKNIVFATGTPVSNSISELYTMMNYIQPDILKRYQVDYFDSWVGAFGEIQNSMELAPTGDKYQPKKRFKKFVNLPELMKIYKETADIQTQDMLDLPVPEAHIIPIESELTENQKLYLEELVMRSDAVKCGTVDPSQDNMLKITGEARKLAIDMRLLDSSYSLADNHKLLQVVDNVERIYREGMENKATQMIFSDIGTPKKKDNGFDVYSEIKALLVDRGIPSMEIAFVHDANSDEKKNSLSRKVNAGEVRVLLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQQRNGRIIRQGNENKEVDIYHYITKGSFDNYLWATQENKLRYIKQIMTSKEPIRAAEDIDEQTMTASDFKALATGNPYLKYKMELENDLTLLENQRRAFQRSKDHYRHTISYCEENMPILEKRLSKYEGDIQQSEMSKDQSFSMTIGKQVFEQRAEAGESLHRLIRHNQSDSKEFRTLASYRGFDIKMLSLATNQPLPETFSVKIVGENQYSVSLDLYSPLGTIQRLQHTIDHIKDDQVKTQNLLDELKDKWTTAKVEIEKNFPKEEDYQTKKAEYDVLAPLIETETDLDIIDQALRQFHEKGKEKQEQLSFELD
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V:
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]