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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 24-APR-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae G54
- locus tag: SPG_RS08810 [old locus tag: SPG_1761 ]
- pan locus tag?: PNEUPAN003398000
- symbol: SPG_RS08810
- pan gene symbol?: scpA
- synonym:
- product: segregation/condensation protein A
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPG_RS08810 [old locus tag: SPG_1761 ]
- symbol: SPG_RS08810
- product: segregation/condensation protein A
- replicon: chromosome
- strand: -
- coordinates: 1694946..1695674
- length: 729
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_011072 (1694946..1695674) NCBI
- BioCyc: SPG_RS08810 BioCyc
- MicrobesOnline: see SPG_1761
- PneumoBrowse for strain D39V: SPV_1656 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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721ATGGATATTAAATTAAAAGATTTTGAAGGACCCCTGGACTTGCTCTTGCATCTGGTTTCT
AAGTACCAGATGGATATCTACGATGTGCCCATTACGGAAGTCATCGAACAGTATCTAGCC
TATGTTTCAACCCTGCAGGCCATGCGTCTGGAAGTGACGGGTGAGTACATGGTCATGGCT
AGTCAGCTCATGCTGATTAAGAGTCGTAAACTCCTTCCGAAGGTAGCAGAAGTGACAGAC
TTGGGGGATGACCTGGAGCAGGACCTCCTCTCTCAAATCGAAGAATATCGCAAGTTCAAG
CTCTTGGGTGAGCACTTGGAAGCCAAGCACCAAGAACGGGCCCAGTATTATTCCAAAGCG
CCGACAGAGTTGATTTACGAAGATGCGGAGCTTGTGCATGACAAGACGACCATTGACCTC
TTTTTGGCTTTTTCAAATATCCTAGCCAAGAAAAAAGAGGAGTTTGCACAAAATCACACG
ACTATCTTGCGGGATGAGTATAAGATTGAGGACATGATGATTATTGTGAAAGAATCCTTG
ATTGGACGAGATCAATTGCGCTTGCAGGATTTGTTCAAGGAAGCCCAGAATGTCCAAGAG
ATCATCACCCTCTTTTTGGCAACCCTAGAGTTAATCAAAACCCAGGAGCTGATCCTCGTG
CAAGAGGAGAGTTTCGGAGATATCTATCTCATGGAAAAGAAGGAAGAAAGTCAAGTGCCT
CAAAGCTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPG_RS08810 [old locus tag: SPG_1761 ]
- symbol: SPG_RS08810
- description: segregation/condensation protein A
- length: 242
- theoretical pI: 4.39391
- theoretical MW: 28283.5
- GRAVY: -0.226446
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SPG_1761
- PFAM: Kleisin (CL0157) SMC_ScpA; Segregation and condensation protein ScpA (PF02616; HMM-score: 94.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.8689
- Cytoplasmic Membrane Score: 0.1073
- Cell wall & surface Score: 0.0087
- Extracellular Score: 0.0151
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002608
- TAT(Tat/SPI): 0.00007
- LIPO(Sec/SPII): 0.00052
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MDIKLKDFEGPLDLLLHLVSKYQMDIYDVPITEVIEQYLAYVSTLQAMRLEVTGEYMVMASQLMLIKSRKLLPKVAEVTDLGDDLEQDLLSQIEEYRKFKLLGEHLEAKHQERAQYYSKAPTELIYEDAELVHDKTTIDLFLAFSNILAKKKEEFAQNHTTILRDEYKIEDMMIIVKESLIGRDQLRLQDLFKEAQNVQEIITLFLATLELIKTQELILVQEESFGDIYLMEKKEESQVPQS
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: yidD < SPG_RS08800 < scpB < SPG_RS08810 < xerD < cbpB < SPG_RS08825 < SPG_RS08830 < racE
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1656 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]