From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Hungary19A-6
  • locus tag: SPH_0099 [new locus tag: SPH_RS00460 ]
  • pan locus tag?: PNEUPAN000564000
  • symbol: SPH_0099
  • pan gene symbol?: —
  • synonym:
  • product: phage terminase, large subunit, pbsx family

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPH_0099 [new locus tag: SPH_RS00460 ]
  • symbol: SPH_0099
  • product: phage terminase, large subunit, pbsx family
  • replicon: chromosome
  • strand: +
  • coordinates: 73964..75274
  • length: 1311
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGACCTTTAATGTCCAGAAGAACATCAACCCTCATTTCAAATCTGTTTGGATTTCTAGC
    TTACCTTATAATGTTTTGAAAGGTGGGCGTAACTCTTTTAAATCATCGGTTATTGTACTT
    AAACTAGCGTATATGATGATAAGGTATATTATCGCTGGAGAGGCGGCCAATATCGTTGTT
    ATCCGTAAGGTGGCCAATACTATTAGAGACAGTGTTTTCAATAAAGTTTGGTGGGCATTG
    AACCTTTTTGGTATAGCTGAGCAGTTCACAAAAACAGTTAGCCCGTTTAAAATCGTACAC
    AAAACGACCGGCTCAACATTTTACTTTTACGGACAAGATGACTTTCAAAAACTCAAATCA
    AACGACATTGGAAATATCATAGCGGTTTGGTATGAAGAGGCTGCTGAATTTAATGACCAA
    GAGGACTTTGACCAATCAAACGTGACGTTCATGAGGCAGAAACACCCACGCGCCAAGTTT
    GTACAATTCTTTTGGAGTTACAATCCACCTAGAAATCCATATAGTTGGATCAATGAATGG
    TTTGAGAGCATCAAAACGAATAAGAACTATTTAGCTCACTCAAGCACCTATCTTGATGAT
    GAACTCGGATTCGTTACTGAGCAGATGCTAGAAGATATAGAGCGTATCAAAGAGAATGAC
    TACGATTATTACAGATACTTATATCTAGGTGAGGCAGTGGGATTAGGTAACAACGTGTAT
    AACATGAGTATGTTTCATGCTATTGATGCTTTGCCTAGCGATGATAAGCTGATTGGCATA
    TCATTTGCGCTAGATGGCGGACATCAACAGTCAGCAACCGCTTGTTGCGCTTTTGGAATA
    ACAGCTAAAGGTAAGGTTATATTACTAGATACTTGGTATTATTCACCAGCTGGACAAGTG
    GTAAAGAAAGCGCCTAGTCAGTTATCTAAAGAGATATATGCTTATATGCGATCAGTTATT
    GAGAAGTACAGAGTACAAGCCTTGCAATACACAATAGATAGTGCTGAGGGAGCGTTAAGA
    AACCAGATGTTTCTTGACTTTGGTTTGAAATGGCATCCGGTCGCTAAACTTAGAAAAGTG
    ACTATGATTGACAGTTTTCAATCTTTGCTTGCTCAAGGTCGCTTTTACTATCTCAACACC
    GAAAACAACAAGATATTTATTGAAGAACACAAGATGTATCGTTGGGATGAAAAGACTATC
    AAATCTGATAATCCTAGCGTTATCAAAGAAGATGACCATACATGCGACACAACACAGTAT
    TTTGTGTTAGACAATGCAAAATTGCTCGGTTTGCGTGTTGGTAACGTTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1311

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPH_0099 [new locus tag: SPH_RS00460 ]
  • symbol: SPH_0099
  • description: phage terminase, large subunit, pbsx family
  • length: 436
  • theoretical pI: 8.03524
  • theoretical MW: 50522.2
  • GRAVY: -0.309862

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage terminase, large subunit, PBSX family (TIGR01547; HMM-score: 265.1)
  • TheSEED  :
    • Phage terminase, large subunit
  • PFAM:
    P-loop_NTPase (CL0023) Terminase_3; Phage terminase large subunit (PF04466; HMM-score: 142)
    and 2 more
    RNase_H (CL0219) Terminase_3C; Terminase RNAseH like domain (PF17288; HMM-score: 97.4)
    Terminase_6C; Terminase RNaseH-like domain (PF17289; HMM-score: 15)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.013389
    • TAT(Tat/SPI): 0.000681
    • LIPO(Sec/SPII): 0.000939
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTFNVQKNINPHFKSVWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVVIRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKSNDIGNIIAVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWINEWFESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNNVYNMSMFHAIDALPSDDKLIGISFALDGGHQQSATACCAFGITAKGKVILLDTWYYSPAGQVVKKAPSQLSKEIYAYMRSVIEKYRVQALQYTIDSAEGALRNQMFLDFGLKWHPVAKLRKVTMIDSFQSLLAQGRFYYLNTENNKIFIEEHKMYRWDEKTIKSDNPSVIKEDDHTCDTTQYFVLDNAKLLGLRVGNV

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPH_0099&oldid=11052"