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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Hungary19A-6
  • locus tag: SPH_0188 [new locus tag: SPH_RS00900 ]
  • pan locus tag?: PNEUPAN000717000
  • symbol: SPH_0188
  • pan gene symbol?: tnp (pseudogene)
  • synonym:
  • product: transposase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPH_0188 [new locus tag: SPH_RS00900 ]
  • symbol: SPH_0188
  • product: transposase
  • replicon: chromosome
  • strand: +
  • coordinates: 164189..164347
  • length: 159
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    ATGGCATATTCAATAGATTTTCGTAAAAAAGTTCTCTCTTATTGTGAGCGAACAGGTAGT
    ATAACAGAAGCATCACACGTTTTCCAAATCTCACGTAATACCATTTATGGCTGGTTAAAG
    CTAAAAGAGAAAACAGGAGAGCTAAACCACCAAGTATAG
    60
    120
    159

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPH_0188 [new locus tag: SPH_RS00900 ]
  • symbol: SPH_0188
  • description: transposase
  • length: 52
  • theoretical pI: 9.66207
  • theoretical MW: 6077.93
  • GRAVY: -0.467308

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Mobile element protein
  • PFAM:
    HTH (CL0123) HTH_Tnp_IS630; Transposase (PF01710; HMM-score: 50.2)
    and 12 more
    HTH_28; Helix-turn-helix domain (PF13518; HMM-score: 33.5)
    HTH_29; Winged helix-turn helix (PF13551; HMM-score: 21.9)
    HTH_23; Homeodomain-like domain (PF13384; HMM-score: 17.8)
    HTH_17; Helix-turn-helix domain (PF12728; HMM-score: 17.5)
    HTH_Tnp_ISL3; Helix-turn-helix domain of transposase family ISL3 (PF13542; HMM-score: 15)
    HTH_Tnp_1_2; Helix-turn-helix of insertion element transposase (PF13022; HMM-score: 14.3)
    HTH_22; HTH domain (PF13309; HMM-score: 13.9)
    no clan defined DUF658; Protein of unknown function (DUF658) (PF04936; HMM-score: 13.3)
    HTH (CL0123) HTH_30; PucR C-terminal helix-turn-helix domain (PF13556; HMM-score: 13.1)
    CENP-B_N; CENP-B N-terminal DNA-binding domain (PF04218; HMM-score: 12.6)
    HTH_psq; helix-turn-helix, Psq domain (PF05225; HMM-score: 12.1)
    DUF1804; Protein of unknown function (DUF1804) (PF08822; HMM-score: 11.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0.24
    • Cytoplasmic Membrane Score: 0.05
    • Cellwall Score: 0.8
    • Extracellular Score: 8.91
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9823
    • Cytoplasmic Membrane Score: 0.0006
    • Cell wall & surface Score: 0.0009
    • Extracellular Score: 0.0162
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.013741
    • TAT(Tat/SPI): 0.001478
    • LIPO(Sec/SPII): 0.004866
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MAYSIDFRKKVLSYCERTGSITEASHVFQISRNTIYGWLKLKEKTGELNHQV

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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