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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae Hungary19A-6
- locus tag: SPH_0868 [new locus tag: SPH_RS04190 ]
- pan locus tag?: PNEUPAN001710000
- symbol: SPH_0868
- pan gene symbol?: —
- synonym:
- product: VanZ family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPH_0868 [new locus tag: SPH_RS04190 ]
- symbol: SPH_0868
- product: VanZ family protein
- replicon: chromosome
- strand: +
- coordinates: 806546..807028
- length: 483
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP000936 (806546..807028) NCBI
- BioCyc: see SPH_RS04190
- MicrobesOnline: 5695704 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_0670 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481ATGATGAAGAAGACTTATAATCATATTTTGGTCTGGGGAGTCATTTTCTATAGCATTTGC
ATTGTCTGTTTTTGCTTTACTCCTCAAGAACAATCTACCGTGGGAGTGGGAACTCCAGGT
ATTCAGCATCTTGGACGCCTGGTTTTTCTTTTGACTCCTTTCAATTCTCTCTGGAAACTG
GGCGAAGTGAGTGACATTGGACAATTATGTTGGATTTTTTTACAAAATATCCTCAATGTC
TTCTTGTTTTTTCCTCTGATTTTCCAACTCCTTTATCTATTTCCAAATTTGCGGAAAACA
AAAAAGGTCCTTCTTTTTAGTTTTCTTGTGAGTCTTGGAATCGAGTGTACGCAATTAATC
TTGGACTTTTTCTTTGATTTCAATCGCGTCTTTGAGATTGATGATTTGTGGACCAACACT
TTGGGTGGCTATCTGGCTTGGCTCCTTTATAAACGATTACATAAAAACAAGATAAGGAAT
TAA60
120
180
240
300
360
420
480
483
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPH_0868 [new locus tag: SPH_RS04190 ]
- symbol: SPH_0868
- description: VanZ family protein
- length: 160
- theoretical pI: 8.99611
- theoretical MW: 18843.4
- GRAVY: 0.5675
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- VanZF-related protein
- PFAM: no clan defined VanZ; VanZ like family (PF04892; HMM-score: 79.7)and 3 moreHerpes_BMRF2; Herpesvirus BMRF2 protein (PF04633; HMM-score: 15.9)DUF2809; Protein of unknown function (DUF2809) (PF10990; HMM-score: 13.3)EBP; EXPERA (EXPanded EBP superfamily) (PF05241; HMM-score: 11.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 3
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0001
- Cytoplasmic Membrane Score: 0.9971
- Cell wall & surface Score: 0
- Extracellular Score: 0.0028
- SignalP: Signal peptide LIPO(Sec/SPII) length 24 aa
- SP(Sec/SPI): 0.177169
- TAT(Tat/SPI): 0.001233
- LIPO(Sec/SPII): 0.644912
- Cleavage Site: CS pos: 24-25. VCF-CF. Pr: 0.4038
- predicted transmembrane helices (TMHMM): 4
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MMKKTYNHILVWGVIFYSICIVCFCFTPQEQSTVGVGTPGIQHLGRLVFLLTPFNSLWKLGEVSDIGQLCWIFLQNILNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILDFFFDFNRVFEIDDLWTNTLGGYLAWLLYKRLHKNKIRN
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0670 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]