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TIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Hungary19A-6
  • locus tag: SPH_1108
  • pan locus tag?:
  • symbol: SPH_1108
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPH_1108
  • symbol: SPH_1108
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1023175..1023432
  • length: 258
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP000936 (1023175..1023432) NCBI
  • BioCyc:
  • MicrobesOnline: 5695945 MicrobesOnline
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    TTGAGCAAGGCAAATCAACTCTTGGAACAAATCCATGAAGAAGGAATCAGACAATCCTTG
    GCAGAAGAAGTAGAAAATCTAAAAGCTGCCACAAACAAGGTTGATGCAGACTTGGATGAA
    GTAAACAGTCAGGTAAAAGATGTTTTGACTCGTATCGCTAGCGCCCTTCAACAAGAAAAG
    GAAAATGCTGAGCAAGATTCTCAGACACTTGTACTCTATCAAAAACTCTACGATATTCTC
    ATGTCGCTTAGAAAGTAA
    60
    120
    180
    240
    258

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPH_1108
  • symbol: SPH_1108
  • description: hypothetical protein
  • length: 85
  • theoretical pI: 4.38856
  • theoretical MW: 9671.8
  • GRAVY: -0.610588

⊟Function[edit | edit source]

  • TIGRFAM:
    two transmembrane protein (TIGR04527; HMM-score: 13.1)
    Genetic information processing Mobile and extrachromosomal element functions Plasmid functions integrating conjugative element protein, PFL_4705 family (TIGR03752; HMM-score: 11.1)
    SH3 domain protein (TIGR04211; HMM-score: 10.9)
  • TheSEED  :
    • hypothetical protein
  • PFAM:
    tRNA_bind_arm (CL0298) Seryl_tRNA_N; Seryl-tRNA synthetase N-terminal domain (PF02403; HMM-score: 17.8)
    no clan defined Pex19; Pex19 protein family (PF04614; HMM-score: 16.4)
    DUF6664; Family of unknown function (DUF6664) (PF20369; HMM-score: 15.8)
    Laminin_II; Laminin Domain II (PF06009; HMM-score: 15.7)
    Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein (PF10267; HMM-score: 14.5)
    and 9 more
    ATG17_like; Autophagy protein ATG17-like domain (PF04108; HMM-score: 13.5)
    CCDC22; Coiled-coil domain-containing protein 22 (PF05667; HMM-score: 13.2)
    FlaC_arch; Flagella accessory protein C (FlaC) (PF05377; HMM-score: 12.9)
    Traffic (CL0147) Sec20; Sec20 (PF03908; HMM-score: 12.4)
    no clan defined Spc7; Spc7 kinetochore protein (PF08317; HMM-score: 12.4)
    P-loop_NTPase (CL0023) GTP_EFTU; Elongation factor Tu GTP binding domain (PF00009; HMM-score: 11.9)
    no clan defined Spc24; Spc24 subunit of Ndc80 (PF08286; HMM-score: 11.8)
    Prominin; Prominin (PF05478; HMM-score: 11)
    Zn_Beta_Ribbon (CL0167) DUF1451; Zinc-ribbon containing domain (PF07295; HMM-score: 10.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.4886
    • Cytoplasmic Membrane Score: 0.2561
    • Cell wall & surface Score: 0.0013
    • Extracellular Score: 0.254
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005874
    • TAT(Tat/SPI): 0.001753
    • LIPO(Sec/SPII): 0.000911
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSKANQLLEQIHEEGIRQSLAEEVENLKAATNKVDADLDEVNSQVKDVLTRIASALQQEKENAEQDSQTLVLYQKLYDILMSLRK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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