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TIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Hungary19A-6
  • locus tag: SPH_1454
  • pan locus tag?:
  • symbol: SPH_1454
  • pan gene symbol?: —
  • synonym:
  • product: transposase subfamily, putative

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPH_1454
  • symbol: SPH_1454
  • product: transposase subfamily, putative
  • replicon: chromosome
  • strand: +
  • coordinates: 1341619..1342137
  • length: 519
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP000936 (1341619..1342137) NCBI
  • BioCyc:
  • MicrobesOnline: 5696282 MicrobesOnline
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    TTGGGGTGTTTTATTATGAAATTGAGTTATGAGGATAAAGTTCAGATCTATGAACTAAGA
    AAGCAAGGATATAGCTTAGAGAAGATTTCAAATAAATTTGAGATAAACAATTCTAATCTT
    AGGTACATGATTAAATTGATTGATCGTTACGGAATAGAGTTCATCAAAAAAGGGAAAAAT
    CGATACTATTCTCCAGAACTAAAACAAGAAATGATTGATAAAGTTTTACATGAAAACTGG
    TCTCAAGATAGAGTTTCTCTCAAATATGCTCTCCCAAATCGTGGTATGCTTCCAAATTGG
    CTGGCGCAATACAAGAAAAACGGGTATACTATTGTTGAGAAAACAAGAGAGAGAGTACCT
    AAAATGGGACGTAAACGTAAGAAAACTTGGGAAGAAATGACAGAACTAGAGCGACTTCAA
    GAGGAGAATGAACGCTTACGTACCGAGGTGGCTTACTTAAAAAAGTTAAAAGAGCTGGAA
    GACAGGGACGAAGCCCTAGAGCGAGAAAGGCAGAGATAG
    60
    120
    180
    240
    300
    360
    420
    480
    519

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPH_1454
  • symbol: SPH_1454
  • description: transposase subfamily, putative
  • length: 172
  • theoretical pI: 10.0108
  • theoretical MW: 21095.3
  • GRAVY: -1.11512

⊟Function[edit | edit source]

  • TIGRFAM:
    Signal transduction Regulatory functions DNA interactions DNA-binding protein, Tfx family (TIGR00721; HMM-score: 14.1)
  • TheSEED  :
    • Mobile element protein
  • PFAM:
    HTH (CL0123) HTH_38; Helix-turn-helix domain (PF13936; HMM-score: 20.5)
    and 9 more
    HTH_28; Helix-turn-helix domain (PF13518; HMM-score: 16)
    no clan defined HALZ; Homeobox associated leucine zipper (PF02183; HMM-score: 14.6)
    NADP_Rossmann (CL0063) SRR1; SRR1 domain (PF07985; HMM-score: 14.6)
    HTH (CL0123) HTH_35; Winged helix-turn-helix DNA-binding (PF13693; HMM-score: 13.9)
    HTH_40; Helix-turn-helix domain (PF14493; HMM-score: 13.2)
    no clan defined YabA; Initiation control protein YabA (PF06156; HMM-score: 12.4)
    HTH (CL0123) Bot1p; Eukaryotic mitochondrial regulator protein (PF12298; HMM-score: 12)
    HTH_Tnp_1; Transposase (PF01527; HMM-score: 10.9)
    MerR_1; MerR HTH family regulatory protein (PF13411; HMM-score: 9.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.99
    • Cytoplasmic Membrane Score: 0.001
    • Cell wall & surface Score: 0.0023
    • Extracellular Score: 0.0068
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003723
    • TAT(Tat/SPI): 0.000336
    • LIPO(Sec/SPII): 0.000926
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MGCFIMKLSYEDKVQIYELRKQGYSLEKISNKFEINNSNLRYMIKLIDRYGIEFIKKGKNRYYSPELKQEMIDKVLHENWSQDRVSLKYALPNRGMLPNWLAQYKKNGYTIVEKTRERVPKMGRKRKKTWEEMTELERLQEENERLRTEVAYLKKLKELEDRDEALERERQR

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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