Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae JJA
- locus tag: SPJ_0205 [new locus tag: SPJ_RS01030 ]
- pan locus tag?: PNEUPAN000921000
- symbol: SPJ_0205
- pan gene symbol?: —
- synonym:
- product: lipoprotein, putative
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPJ_0205 [new locus tag: SPJ_RS01030 ]
- symbol: SPJ_0205
- product: lipoprotein, putative
- replicon: chromosome
- strand: +
- coordinates: 189187..189756
- length: 570
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP000919 (189187..189756) NCBI
- BioCyc: see SPJ_RS01030
- MicrobesOnline: 7478485 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_0179 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541ATGAAAAAAATAGTTCTTGTTAGTCTAGCTTTCCTTTTTGTCCTGGTTGGTTGCGGACAG
AAAAAAGAAACTGGACCAGCTACAAAAACAGAAAAAGATACGCTTCAGTCGGCATTGCCA
GTTATTGAAAATGCTGAGAAGAATACAGTTGTAACTAAGACTTTGGTCTTGCCCAAGTCA
GATGATGGTAGCCAGCAGACACAAACAATTACTTACAAAGACAAGACTTTTTTGAGTCTA
GCTATCCAACAAAAACGTCCAGTCTCTGATGAGTTGAAGACTTATATTGACCAACATGGA
GTGGAGGAAACTCAAAAAGCTCTTCTTGAAGCGGAGGAGAAGGATAAGTCTATCATTGAA
GCTCGTAAATTGGCAGGTTTCAAACTTGAAACAAAACTATTGAGCGCAACGGAACTTCAA
ACAACGACTAGTTTTGATTTTCAAGTTCTGGATGTCAAGAAGGCTTCCCAGTTGGAACAT
CTGAAGAATATTGGTTTGGAAAATCTTTTGAAAAATGAACCAAGCAAATATATTTCAGAT
AGATTGGCAAATGGCGCGACAGAACAATAG60
120
180
240
300
360
420
480
540
570
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPJ_0205 [new locus tag: SPJ_RS01030 ]
- symbol: SPJ_0205
- description: lipoprotein, putative
- length: 189
- theoretical pI: 7.50898
- theoretical MW: 21008.9
- GRAVY: -0.433862
⊟Function[edit | edit source]
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0003
- Cytoplasmic Membrane Score: 0.9042
- Cell wall & surface Score: 0.0057
- Extracellular Score: 0.0898
- SignalP: Signal peptide LIPO(Sec/SPII) length 17 aa
- SP(Sec/SPI): 0.00067
- TAT(Tat/SPI): 0.000086
- LIPO(Sec/SPII): 0.998958
- Cleavage Site: CS pos: 17-18. LVG-CG. Pr: 0.9996
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKKIVLVSLAFLFVLVGCGQKKETGPATKTEKDTLQSALPVIENAEKNTVVTKTLVLPKSDDGSQQTQTITYKDKTFLSLAIQQKRPVSDELKTYIDQHGVEETQKALLEAEEKDKSIIEARKLAGFKLETKLLSATELQTTTSFDFQVLDVKKASQLEHLKNIGLENLLKNEPSKYISDRLANGATEQ
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0179 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.