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serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae JJA
  • locus tag: SPJ_1804 [new locus tag: SPJ_RS08960 ]
  • pan locus tag?: PNEUPAN003393000
  • symbol: SPJ_1804
  • pan gene symbol?: msmG
  • synonym:
  • product: sugar ABC transporter, permease protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPJ_1804 [new locus tag: SPJ_RS08960 ]
  • symbol: SPJ_1804
  • product: sugar ABC transporter, permease protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1722395..1723228
  • length: 834
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGAAACAAGATGAAAGAAAAGCCCTGATTGGCAAATACATTCTATTGATTCTAGGATCG
    GTTCTGATTTTAGTGCCGCTCCTTGCTACTCTCTTTAGTTCCTTCAAACCCACTAAGGAT
    ATTGTAGATAATTTCTTTGGCTTTCCAACCAACTTCACATGGGACAACTTTAGCCGTCTC
    TTAGCTGATGGGATTGGAGGCTATTATTGGAACTCTGTCGTCATCACTGTCTTGTCTTTA
    CTTGCAGTAATGATCTTTATCCCTATGGCAGCCTACTCCATCGCTCGCAATATGAGTAAA
    AGAAAAGCCTTTACCATCATGTATACCCTCTTAATCCTCGGAATCTTCGTACCTTTCCAA
    GTCATCATGATTCCGATTACGGTTATGATGAGTAAACTCGGTTTGGCTAATACCTTTGGT
    TTGATCTTGCTCTACTTGACCTATGCGATTCCACAGACCCTCTTTCTCTATGTTGGCTAT
    ATCAAAATCTCGATTCCAGAAAGTCTGGATGAAGCAGCAGAGATCGATGGGGCTAATCAA
    TTTACAACCTATTTCCGCATCATCTTCCCAATGATGAAACCGATGCATGCGACAACCATG
    ATCATCAATGCCCTTTGGTTCTGGAATGACTTCATGTTGCCACTCCTTGTCTTGAACCGG
    GATTCCAAAATGTGGACTCTGCCTTTGTTCCAATACAACTACGCAGGCCAATATTTCAAC
    GACTACGGACCAAGCTTTGCCTCTTACGTGGTCGGCATTATCAGTATCACCATTGTCTAT
    CTCTTCTTCCAACGCCATATCATTTCAGGAATGAGCAACGGGGCAGTGAAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    834

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPJ_1804 [new locus tag: SPJ_RS08960 ]
  • symbol: SPJ_1804
  • description: sugar ABC transporter, permease protein
  • length: 277
  • theoretical pI: 9.54211
  • theoretical MW: 31574.5
  • GRAVY: 0.66426

⊟Function[edit | edit source]

  • TIGRFAM:
    2-aminoethylphosphonate ABC transporter, permease protein (TIGR03226; HMM-score: 20)
    Metabolism Transport and binding proteins Amino acids, peptides and amines putative 2-aminoethylphosphonate ABC transporter, permease protein (TIGR03262; HMM-score: 18.8)
  • TheSEED  :
    • Multiple sugar ABC transporter, permease protein MsmG
    Carbohydrates Di- and oligosaccharides Fructooligosaccharides(FOS) and Raffinose Utilization  Multiple sugar ABC transporter, membrane-spanning permease protein MsmG
  • PFAM:
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 88.2)
    and 1 more
    no clan defined DUF6161; Family of unknown function (DUF6161) (PF19658; HMM-score: 6.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.137045
    • TAT(Tat/SPI): 0.009684
    • LIPO(Sec/SPII): 0.063084
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKQDERKALIGKYILLILGSVLILVPLLATLFSSFKPTKDIVDNFFGFPTNFTWDNFSRLLADGIGGYYWNSVVITVLSLLAVMIFIPMAAYSIARNMSKRKAFTIMYTLLILGIFVPFQVIMIPITVMMSKLGLANTFGLILLYLTYAIPQTLFLYVGYIKISIPESLDEAAEIDGANQFTTYFRIIFPMMKPMHATTMIINALWFWNDFMLPLLVLNRDSKMWTLPLFQYNYAGQYFNDYGPSFASYVVGIISITIVYLFFQRHIISGMSNGAVK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: CcpA regulon
    CcpA(TF)important in Global catabolite repression; RegPrecise    transcription unit transferred from TIGR4 data RegPrecise 

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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