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serotype 4
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D39V
serotype 2
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serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
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serotype 6A
70585
serotype 5
A026
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serotype 3
AP200
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serotype 19A
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serotype 1
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serotype 14
JJA
serotype 14
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serotype 1
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serotype 2
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SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
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TCH8431/19A
serotype 19A
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serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae JJA
  • locus tag: SPJ_1949 [new locus tag: SPJ_RS09665 ]
  • pan locus tag?: PNEUPAN003573000
  • symbol: SPJ_1949
  • pan gene symbol?: sceB
  • synonym:
  • product: conserved hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPJ_1949 [new locus tag: SPJ_RS09665 ]
  • symbol: SPJ_1949
  • product: conserved hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1821127..1821894
  • length: 768
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGAGTCAAAAGTTGAATCACCTTGATGTAGGGGAGTTTGTCTTATTGCTGCCTGAACAC
    CTCCGTTCAGAGGAAGAACATTATAAATCTGTTTTTGAAGACGACTTAACCAGTCGCATG
    TCTAGTCAAGATGAACGACAGCAAATGACTGCTACGGTAGGTTATTTAGAATCAGGTCAG
    GATCGTTTTGTGTATAATACGACCCCTATTTCTTACCAGCAGTTTTTGAAAGATCCAATC
    ATCATTGTTATAACACCCCAATTAACTGGTCCACAGTCCATTTTGTTTTGGATAGACGCA
    GTACAGAACTACGTTCTCTTTAATCAATTGTCTGATGCCCAGGAGCTTATCCAGAGACAA
    GGCATTGAAAATTGGGTCTCAGAAATGCAAACAGGTTACCACAACTACATCACATTATTG
    GATAATATCCAGAGGGAACGTTGGGTAATGCTAGCAGGAGCTGTGCTTGGGATTGCAACT
    TCAATCTTGTTGTTTAACACTATGAATAGGCTCTACTTTGAAGAATTTAGACGTGCCATT
    TTTATCAAACGCATTGCAGGTCTCAGGTTCTTAGAAATCCATCGCACTTATCTCTTTGCT
    CAACTGGGTGTGTTTTTACTGGGATTTGTTGCGAGTGTATTTCTTCAGGTAGAGATACTA
    GTTGCTTTCTTAGTCTCGTTACTCTTTACTGGTCTATCTCTTTTACAGTTACATGTCCAA
    ATGCAGAAAGAAAACAAGATGTCCATGCTTGTTTTGAAGGGAGGTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    768

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPJ_1949 [new locus tag: SPJ_RS09665 ]
  • symbol: SPJ_1949
  • description: conserved hypothetical protein
  • length: 255
  • theoretical pI: 5.61177
  • theoretical MW: 29535.1
  • GRAVY: 0.138431

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Toxin production and resistance bacteriocin-associated integral membrane protein (TIGR01654; HMM-score: 128.9)
    and 1 more
    Metabolism Energy metabolism Other phosphoenolpyruvate carboxylase (TIGR02751; EC 4.1.1.31; HMM-score: 12.3)
  • TheSEED  :
    • immunity protein, probable
  • PFAM:
    BPD_transp_1 (CL0404) DUF1430; Protein of unknown function (DUF1430) (PF07242; HMM-score: 92.8)
    and 3 more
    no clan defined DUF6637; Family of unknown function (DUF6637) (PF20342; HMM-score: 11.9)
    DUF4229; Protein of unknown function (DUF4229) (PF14012; HMM-score: 11)
    RseC_MucC; Positive regulator of sigma(E), RseC/MucC (PF04246; HMM-score: 7.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.009183
    • TAT(Tat/SPI): 0.001518
    • LIPO(Sec/SPII): 0.000589
  • predicted transmembrane helices (TMHMM): 3

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSQKLNHLDVGEFVLLLPEHLRSEEEHYKSVFEDDLTSRMSSQDERQQMTATVGYLESGQDRFVYNTTPISYQQFLKDPIIIVITPQLTGPQSILFWIDAVQNYVLFNQLSDAQELIQRQGIENWVSEMQTGYHNYITLLDNIQRERWVMLAGAVLGIATSILLFNTMNRLYFEEFRRAIFIKRIAGLRFLEIHRTYLFAQLGVFLLGFVASVFLQVEILVAFLVSLLFTGLSLLQLHVQMQKENKMSMLVLKGG

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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